Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2159 ATGTCCCTTAATTCATGCGGCTTTCAAAGCTTGTACCTTGGCAGTTCCAAATGCTCCAACCTCGTTTTCCAGGATGTTAGGAAACTGCAACAGTACCAAGATGCATTAGACAAGTGCTCCAACTTCGACCACCCATTTGGTGAATCTTGTGCAGATTGCACCGGTGCAATATTAAGCTTAAGAGATAGTTTATATAATCAAGTGACCAACAACAACAACAACCACACTGAGGTAGCCATATGTGCGGTAGCAGCTATTGTTGCTGTTGCAGCTGGGAAACCAAATGATCCTGCCGTTGACAAAGTCTTACGCTGCTTGCCACCTTCAGCTTCTGGATCAGACAAGAGATCATTGTGGAAATCCTTGTTGAGTGTGCCGGTAGTTATCCTTGCAATATTGCTTGTGGTTATAATGGTAAAACGTTTGTCCAAGAAGAAGCTTCGTAGACAGGCAAACTTGAAAGAGATCGCTGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAGAATGCCATGAATTATGGCGGTGAAAAGATATGCCTTGGACGTGGGAGTGCAGGGCAGGTGTATAGAGGTATTCTCCCAAGTGGTCAACTCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCTGAGTCTTTCACTCGAGAAGTTGAAGGTCTTTCAAGGCTTCGCCATCCTAACCTGGTTTGCCTCTTTGGATGCTGCATAGAAGGGGATGAGAGATATTTAGTCTATGAATTCTGTGCAAACGGGAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTGACATGGGAAACCAGAGTAAGAATTTTGAGAGATTGTTCATATGCACTCAAGTACCTCCACCATCATATAGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGAATGAGAAATACCAAGCGAAACTGTCAGATTTTGGACTGGCAAAAGTGATGGGGATTAAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACAATAGGCTACATGGATCCAGAGTACATGAGTAATGCCAAGCTAACCTGCGCTAGCGATGTTTACAGTTTTGGTATTGTTGCTCTACAAATTCTGTCGGGACAGAAAGTCATCGAGTTGGATCTTGATGCCAGAGATCAACTCACTAGGAAGGCAAGAGATGTGAGCATGGGAAAGCGTCCACTGTCAGATTTTGAAGACCCGCGACTAAATGGAAAAGTTGATAAGACAGACTTCGAAGCCATCCTTCAGATTGCAGTTTTGTGTGTTGCCAAATCAAGCAAAGGTCGTCCAACCATTGAGCTTGTTTTTGAGGAATTGGACAAGGTCTGCAGGGATACAGAAACACGGATGAAGCAAAAGAAGGATGAGAGCTTATCAACAACATCCACCCCGAGCTCCAAATCGTCAAAATCGGCGCCTCTATGA 1437 0.437 MSLNSCGFQSLYLGSSKCSNLVFQDVRKLQQYQDALDKCSNFDHPFGESCADCTGAILSLRDSLYNQVTNNNNNHTEVAICAVAAIVAVAAGKPNDPAVDKVLRCLPPSASGSDKRSLWKSLLSVPVVILAILLVVIMVKRLSKKKLRRQANLKEIAAWSGLYWFCKREIENAMNYGGEKICLGRGSAGQVYRGILPSGQLVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSYALKYLHHHIEGCVVHRDIKLTNILLNEKYQAKLSDFGLAKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKVDKTDFEAILQIAVLCVAKSSKGRPTIELVFEELDKVCRDTETRMKQKKDESLSTTSTPSSKSSKSAPL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2159 478 MobiDBLite consensus disorder prediction 450 478 - -
Gso3g2159 478 Gene3D Phosphorylase Kinase; domain 1 135 250 - -
Gso3g2159 478 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 40 2 457 - -
Gso3g2159 478 MobiDBLite consensus disorder prediction 461 478 - -
Gso3g2159 478 SMART serkin_6 177 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2159 478 Gene3D Transferase(Phosphotransferase) domain 1 251 472 - -
Gso3g2159 478 Pfam Protein kinase domain 183 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2159 478 ProSiteProfiles Protein kinase domain profile. 177 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2159 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Gso3g2159 478 SUPERFAMILY Protein kinase-like (PK-like) 160 443 IPR011009 -
Gso3g2159 478 PANTHER OS01G0253100 PROTEIN 2 457 IPR045271 GO:0004714|GO:0006468
Gso3g2159 478 Coils Coil 440 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2159 Gso-Chr3 46846249 46849269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2159 182 461 Receptor kinase-like Gene Family AT1G51800 41.034 3.30e-58 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Gso3g2159 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2159 - - gsj:114407767 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2113 19 49684620 49688289 Gso3g2159 3 46846249 46849269 GST
Gso3g2159 3 46846249 46849269 Gso7g0578 7 6131451 6134789 PCT
Gso3g2159 3 46846249 46849269 Gso16g0266 16 3047437 3051577 PCT