Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2156 ATGTCTGAAGTGAATGCGACCCCTGAAATTCCTCAAAGCAACACCATCTACATCAACAACCTCAACGAGAAGATTAAGATTGATGAGTTGAAGAAGTCTCTGAACGCTGTTTTCACTCAGTTCGGGAAGATACTTGAGGTGTTAGCTTTCAAAACCCTAAAGCACAAAGGTCAAGCTTGGGTGGTCTTTGAAGATGCCTCTTCTGCTTCCAACGCCCTAAGGCAAATGCAAGGTTTCCCCTTCTATGATAAGCCCATGAGAATACAGTATGCAAAGACCAAATCTGATATAATAGCAAAAGCAGATGGTACTTTCGTTCCTAGGGAAAAACGAAAGAGGCATGATGACAAAGCCAAAAAGCGGAAGGACCAACATGATGCTAATTTAGCTGGAATGGGCCTGAATCCAGCTTATGCTGGTGCTTATGGTGCAGCACCTGCTATAGCTTATCCAGGCGGTGCAAAATCTATGGTACCTGAGGCTCCTGCACCACCAAATAATATTCTCTTTATTCAGAATCTTCCCAATGACTCAACTCCCATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGATTTAAGGAAGTTAGAATGGTTGAAACAAAGCCAGGGATTGCCTTTGTGGAATATGGAGATGAAATGCAATCCACAGTGGCTATGCAGACGCTGCAAGGTTTCAAGATAACCCCACAAAACCCCATGTTGATAACTTATGCCAAGAAATAG 726 0.4298 MSEVNATPEIPQSNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDASSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKAKKRKDQHDANLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEAPAPPNNILFIQNLPNDSTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2156 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Gso3g2156 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
Gso3g2156 241 CDD RRM1_U1A_like 15 92 - -
Gso3g2156 241 CDD RRM2_U1A_like 165 237 - -
Gso3g2156 241 Gene3D - 155 241 IPR012677 -
Gso3g2156 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 6 241 - -
Gso3g2156 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 6 241 - -
Gso3g2156 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 228 IPR000504 GO:0003723
Gso3g2156 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Gso3g2156 241 SUPERFAMILY RNA-binding domain, RBD 12 230 IPR035979 GO:0003676
Gso3g2156 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Gso3g2156 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
Gso3g2156 241 Gene3D - 7 114 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2156 Gso-Chr3 46826338 46829123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2156 3 137 Eukaryotic Initiation Factors Gene Family AT4G34110 28.261 6.74e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2156 K11091 - gmx:100500002 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2110 19 49661104 49664642 Gso3g2156 3 46826338 46829123 GST