Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2154 ATGGCATCGGAATTGAAGGAGAAGTTGCGCGAATTGGTGAAGGCCATCGTGGACTCCGACGACTACTCTCTTCAAGCCGCCGACGAAGCCATCGCCACACTTTCGTCTCTCAAACATTTGAAGTCGCCGGACGACTTTCCTCTTCCTCCCCAATTTCGCTGCCCCATTTCAACCCAATTGATGTCCGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTTATTCAGAGGTGGTTGAATGAGGGTCACCGAACATGTCCTCAGACACAGCAGGTTCTGTCTCACACTATTCTAACTCCCAATTACTTGGTCCGAGACATGATTCTCCAGTGGTGTAGGGACCGTGGAATTGACTTACCTGGCCCTGTTAAGGACATTGATGAAGCTGTCACCAATGCGGATAGAAACCATTTGAATTCTTTGCTTCGTAAGTTGCAGTTGTCTGTTCCTGATCAGAAAGAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCCATTCGAACCCTTGTTGGGGAGTCCAGTGATGTCATTCCACAGTTGCTGAGTCCGTTATCGTCGCCCGGTGCGGCTTCTACTGATCCTGATCTCCACGAGGACTTGATCACCACTATTCTGAATCTCTCAATCCATGATGATAATAAGAAGGTGTTCGCCACGGATCCTGCGGTGATTTCTCTGCTTATTGATGCCCTGAAATGTGGAACAATTCAAACAAGGAGTAATGCCGCGGCCACTATTTTCACCTTGTCTGCGATTGATTCCAACAAGCACATCATTGGAGAATCTGGGGCTATTAAACATTTGCTTGAGCTTTTGGATGAGGGACAACCATTCGCCATGAAAGATGCTGCTTCGGCCATATTTAACCTTTGTCTTGTGCACGAGAATAAGGGGAGGACCGTTCGAGATGGGGCAGTTCGGGTTATTCTGAACAAGATGATGGACCACATACTAGTTGATGAGTTGTTGGCTATATTGGCACTGCTCTCCAGCCATCCCAAGGCTGTTGAAGAAATGGGTGATTTTGATGCTGTTCCTTTGTTATTGGGGATTATTAGGGAGAGCACATCTGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTATATACAATCTGTTTTAGTGATAGAACAAAGTTAAAGGAAATTAGAGAAGAAGAAAAGGCCAATGGTACACTGTCAAAGCTTGCAAAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAATGGTATTCTCGAGAGGCTTAATAGATCCCCCTCCTTAACTCACACTGCTTAG 1293 0.4617 MASELKEKLRELVKAIVDSDDYSLQAADEAIATLSSLKHLKSPDDFPLPPQFRCPISTQLMSDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHTILTPNYLVRDMILQWCRDRGIDLPGPVKDIDEAVTNADRNHLNSLLRKLQLSVPDQKEAAKELRLLTKRMPSIRTLVGESSDVIPQLLSPLSSPGAASTDPDLHEDLITTILNLSIHDDNKKVFATDPAVISLLIDALKCGTIQTRSNAAATIFTLSAIDSNKHIIGESGAIKHLLELLDEGQPFAMKDAASAIFNLCLVHENKGRTVRDGAVRVILNKMMDHILVDELLAILALLSSHPKAVEEMGDFDAVPLLLGIIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLSKLAKCGTSRAKRKANGILERLNRSPSLTHTA* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2154 430 Gene3D - 178 322 IPR011989 -
Gso3g2154 430 Gene3D - 323 425 IPR011989 -
Gso3g2154 430 SUPERFAMILY ARM repeat 139 421 IPR016024 -
Gso3g2154 430 SUPERFAMILY RING/U-box 44 125 - -
Gso3g2154 430 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 2 428 - -
Gso3g2154 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 121 IPR013083 -
Gso3g2154 430 ProSiteProfiles U-box domain profile. 47 121 IPR003613 GO:0004842|GO:0016567
Gso3g2154 430 SMART Ubox_2 51 114 IPR003613 GO:0004842|GO:0016567
Gso3g2154 430 PANTHER U BOX DOMAIN-CONTAINING 2 428 - -
Gso3g2154 430 CDD RING-Ubox_PUB 52 94 IPR045210 -
Gso3g2154 430 Pfam U-box domain 49 117 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2154 Gso-Chr3 46816678 46818503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2154 110 430 U-box Gene Family AT3G07360 57.012 5.26e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2154 - - gmx:100806619 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2109 19 49655318 49657144 Gso3g2154 3 46816678 46818503 GST