Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2145 ATGTTCACGCTATCTCGCGTGTTCCCTCTCACTTCCCCTTCCAGGCATAGGCTCTTGGAAGTGCTGTCCTCTAGGAAAGTTGAAGTCGGAGACCGTCTGCGCCAAGAGGGGCGCGATTTTACCTATTCAGCTGCCATTTCTACTGCTACAAATAACTATGCTGCCAAAGGACACGCTTCCGATCGAATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCTGCATTCTCGTTGATTCCTTGTCTTCCAACTTTCACTAAGTTGGATTCTGGGACTGTTGTAGTTGATCGACGCGGTTCAATCATGATGTCTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGATAAAAGACAGAAATTTGCTCTCTCGGCAACTGAAGTTGGTTCTTTGATAACCATGGACGCTCAAGATTCCTGTGATTTCTTTCATGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATGCAAATGGCTACTTTGTGTCTTTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCCGTCACAACTGCTGAGTTTGCTGTAATGAAGACAGCTTGCACTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCAGCAATCCAGAGGCATAGATGGCCTTCAAGCAAAGGGTGACTCTAAAGTTTCAGAGTTGGAATGGGAAAGATGA 729 0.4417 MFTLSRVFPLTSPSRHRLLEVLSSRKVEVGDRLRQEGRDFTYSAAISTATNNYAAKGHASDRIFAPYTVYKGKAAFSLIPCLPTFTKLDSGTVVVDRRGSIMMSFMHSIGERKYDWDKRQKFALSATEVGSLITMDAQDSCDFFHDPSMLSSNAGQVRKSLSIKPHANGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTACTFALPHIMGWDQITNQQSRGIDGLQAKGDSKVSELEWER* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2145 242 Pfam Whirly transcription factor 69 201 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gso3g2145 242 Gene3D Transcriptional Coactivator Pc4; Chain A 53 223 IPR009044 GO:0003677|GO:0006355
Gso3g2145 242 SUPERFAMILY ssDNA-binding transcriptional regulator domain 60 221 IPR009044 GO:0003677|GO:0006355
Gso3g2145 242 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 242 - -
Gso3g2145 242 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 242 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2145 Gso-Chr3 46704509 46708012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2145 38 242 Whirly Transcription Factor Family AT1G71260 58.140 1.26e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gso3g2145 Whirly 1.9e-51 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2145 - - gmx:100527314 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2099 19 49535129 49539085 Gso3g2145 3 46704509 46708012 GST