Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2142 ATGGAACCTAATGACAACCAACTCACCTCTTTCTTCCACCACCACCACCAACAGCACCAACACCACCAGCCGCCGCCACCACCGCAGACCACGGCGTCTCCGACCAACGGGCTCTTGCCGAACGCGGATGGGTCCCACATACTTTACCCCCACTCTGTGGCGTCCGCTGTTTCGTCGCAGCTTGAACCGGCGAAGCGGAAGCGCGGGCGGCCGAGGAAGTACGGAACGCCGGAGCAAGCTCTGGCCGCGAAGAAAGCCGCTACGACGTTGTCTCATTCGTTCTCTGTGGACAAGAAGCCCCACTCCCCGACGTTCCCTTCCTCCAAGAAATCCCATTCCTTCGCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTTCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGTTATTTATGCAACAAAGTAGGCGTGAGATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAGCATTGCATATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGAACTCGAACTGGTGGTCTCAGTGTATGCTTATCTAATACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTCTTTATTGACAACAAGAAGGATACTGGTGCTGGTGTTAAAGGTGACATCTCTGCCAGCAAGTTGCCATCTCCAGTTGGTGAACCGGTATCAAGTTTAGGTTTCCGCCAATCAGTTGACTCTCCCAGTGGTAATCCAATCCGGGGAAATGATGAGCATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGGGACGCCTCCCCGGTCCACAGACTGGGGTCATCCGGATTCAAGAAATACTGGTTTTGAGTTGACAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGAGGCTATGAACAAATTCCCGATTGA 1032 0.5194 MEPNDNQLTSFFHHHHQQHQHHQPPPPPQTTASPTNGLLPNADGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTLSHSFSVDKKPHSPTFPSSKKSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGSIAYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDTGAGVKGDISASKLPSPVGEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLHGTPPRSTDWGHPDSRNTGFELTGHGAHQSPENGGYEQIPD* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2142 343 CDD DUF296 124 235 IPR005175 -
Gso3g2142 343 MobiDBLite consensus disorder prediction 86 112 - -
Gso3g2142 343 MobiDBLite consensus disorder prediction 302 343 - -
Gso3g2142 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 125 235 IPR005175 -
Gso3g2142 343 Gene3D - 125 249 - -
Gso3g2142 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 332 - -
Gso3g2142 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 235 - -
Gso3g2142 343 MobiDBLite consensus disorder prediction 268 282 - -
Gso3g2142 343 MobiDBLite consensus disorder prediction 1 112 - -
Gso3g2142 343 ProSiteProfiles PPC domain profile profile. 119 259 IPR005175 -
Gso3g2142 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 332 IPR039605 GO:0003680
Gso3g2142 343 MobiDBLite consensus disorder prediction 250 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2142 Gso-Chr3 46680697 46686765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2142 43 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 52.410 5.81e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2142 - - gmx:100809675 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2097 19 49510662 49516467 Gso3g2142 3 46680697 46686765 GST