Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2141 ATGGAAAGAGGGTTGCTTCTTTTGTTGTTCTTGTTGTTGGTTATGGTGCTTTCTGTTTGTGGCAACGATGTGGAATATTCACAGTGCAATTGTGACGAGGAAGGGCTTTGGAGCATCCACAACGTGCTGGTTTGTCAGAAATTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTTTCTTGTGCCACTGCAATTTCCTTTCCCACACTCATTCCTCTTCTGCTGAAAATCAAAGTGAGGGAGCTATTTTTGAGGCAGAATGTGTTGGAATTGGGCCAGGAGGTTGGGATGATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACTTGTGAGATTAGGAAATCTCTGGATAAGCATACCATCTTGTATATCACACTTGTTGAGCTTTCCAAGGCATTGGATTTGCACAATTGTGCAGTATGGATGCCTGATGAGGATAGGAGAGAAATGCATTTGACTCATGAGTTGAAACCAAACTCAACAAGGATTTTTCACAATTCTATTCCTATAAGTGATCCTGATGTGTTGGACATAAAGAAGAGCCAAGGGGTGTGGATTTTGAGGCCTGATTCTGCACTAGGAGCTGCAAGTAGTGGTGGTGGTGGATCTGGAGATTCTGGTGCTGTGGCTGCCATTCGCATGCCAATACTTCATGTTTCGAATTTCAAAGGAGGCACACCAGAGTTTGTTGAAACATCTTATGGTGTACTGGTTTTGGTTCTTCCAAATTCAGACTCCAGGGCTTGGACCTCTCATGAAATGGAGATAGTGAAAGTTGTTGCTGACCAGGTGGCTGTGGCATTGTCTCATGCGTCTGTTCTTGAAGAGTCTCAGCTTATGAGCCAGAAACTTGCAGAGCAAAACCGGGCGTTGCAACAGGCTCAAAAGAATGCAATGATGGCCAGGAAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGATAATATAAGACCTGAACAGAAGATTGTTATTGATTCAATTTTGAAAGTTAGCAATGCACTATCACGATTGATTAATGATGTGATGGAGATTGCGGCAAATGACAATGGAAGCTTCCAGTTAGAGATGAAACCTTTCCATCTACATTCAATGATGAGGGAAGCTTCTTGCACTGCCAAGTGTTTGTGTATATATAAAGGCTTTGGTCTTGAAGTTGATGTTGACAAGTCTTTGCCTGATCTGGTCATTGGTGATGAGGCAAGGACTTTCCAAGTAATTTTACATATGATTGGCTATTTATTGAACATATATGATAAAGGGAATCTCATTTTTCAAGTTTATCTTAAAAGTGATAGTGGAGATAGAGATGACAGAAGTTTTGGATTATGGAGATCGAGCATGCAAAATGAGTATGTACATATTAAATTTAATTTTCAGATAAATGGTATAAGTTCCCAGTCAGATGAATCAGTTTCAACAAGAAATTATACTGGTAGAAGGCACTACAACAATGAACCTAAGGAAGGCCTGAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCAAGGTAATATTTGGATATCAACTAACTCTCTGGGTTTGGCACAAGGAATGACGCTTCTTCTCAAGTTTCAGATAGGATCATCCCATGGAAGATTCACTCTTGCTCCTACAGATTTTTCAAACTCTCAGTTTAGAGGGCTTAAGGTTGTGTTGGCTGATGATGATGATGTAAACAGGACTGTGACCAAGAAGCTGCTTGAGAAACTGGGGTGTCAAGTAACTGCTGTTTCATCAGGATTCGAATGTCTTGGTGCTATAAGTGGCTCTGGTAACTCATTCAAAATTATTCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAATTCCAAAGCCATAATTGGCCCTTGATCATAGCTTTTACTGCAAGTGCAGAAGAACACATCAAGGAGAGATGTCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCGTGAGATAGCAGATGAACTTGGAACAGTCTTGCAACGTGCAGGTGAAAAATTGTGA 2103 0.4142 MERGLLLLLFLLLVMVLSVCGNDVEYSQCNCDEEGLWSIHNVLVCQKLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGMMKKQKEASWHVRMLTCEIRKSLDKHTILYITLVELSKALDLHNCAVWMPDEDRREMHLTHELKPNSTRIFHNSIPISDPDVLDIKKSQGVWILRPDSALGAASSGGGGSGDSGAVAAIRMPILHVSNFKGGTPEFVETSYGVLVLVLPNSDSRAWTSHEMEIVKVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRPEQKIVIDSILKVSNALSRLINDVMEIAANDNGSFQLEMKPFHLHSMMREASCTAKCLCIYKGFGLEVDVDKSLPDLVIGDEARTFQVILHMIGYLLNIYDKGNLIFQVYLKSDSGDRDDRSFGLWRSSMQNEYVHIKFNFQINGISSQSDESVSTRNYTGRRHYNNEPKEGLSFSMCKTLVQMMQGNIWISTNSLGLAQGMTLLLKFQIGSSHGRFTLAPTDFSNSQFRGLKVVLADDDDVNRTVTKKLLEKLGCQVTAVSSGFECLGAISGSGNSFKIILLDLHMPEMDGFEVARRIRKFQSHNWPLIIAFTASAEEHIKERCLQVGMNGLIRKPILLREIADELGTVLQRAGEKL* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2141 700 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 379 536 IPR036890 -
Gso3g2141 700 CDD HATPase_ETR2_ERS2-EIN4-like 416 548 - -
Gso3g2141 700 SMART HisKA_10 310 375 IPR003661 GO:0000155|GO:0007165
Gso3g2141 700 CDD HisKA 309 370 IPR003661 GO:0000155|GO:0007165
Gso3g2141 700 ProSiteProfiles Response regulatory domain profile. 575 693 IPR001789 GO:0000160
Gso3g2141 700 Gene3D - 374 554 IPR036890 -
Gso3g2141 700 PANTHER ETHYLENE RECEPTOR 5 48 - -
Gso3g2141 700 PANTHER ETHYLENE RECEPTOR 47 693 - -
Gso3g2141 700 SMART gaf_1 123 284 IPR003018 GO:0005515
Gso3g2141 700 SUPERFAMILY GAF domain-like 126 277 - -
Gso3g2141 700 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 295 375 IPR036097 GO:0000155|GO:0007165
Gso3g2141 700 SMART REC_2 574 689 IPR001789 GO:0000160
Gso3g2141 700 Pfam GAF domain 125 274 IPR003018 GO:0005515
Gso3g2141 700 Gene3D - 107 274 IPR029016 -
Gso3g2141 700 Gene3D - 574 699 - -
Gso3g2141 700 SUPERFAMILY CheY-like 570 695 IPR011006 -
Gso3g2141 700 Pfam His Kinase A (phospho-acceptor) domain 311 375 IPR003661 GO:0000155|GO:0007165
Gso3g2141 700 ProSiteProfiles Histidine kinase domain profile. 317 554 IPR005467 -
Gso3g2141 700 Pfam Response regulator receiver domain 576 686 IPR001789 GO:0000160
Gso3g2141 700 Coils Coil 280 310 - -
Gso3g2141 700 CDD REC_ETR-like 574 689 - -
Gso3g2141 700 PANTHER TWO-COMPONENT HISTIDINE KINASE 47 693 - -
Gso3g2141 700 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 48 - -
Gso3g2141 700 Gene3D - 275 373 - -
Gso3g2141 700 PIRSF Ethylen_sen_hybr_HK 1 49 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gso3g2141 700 PIRSF Ethylen_sen_hybr_HK 46 700 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2141 Gso-Chr3 46674082 46678139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2141 47 698 Miscellaneous Gene Families AT3G04580 59.578 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso3g2141 GAF 5.2e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2141 K14509 - gmx:100805023 1256.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2096 19 49503512 49507617 Gso3g2141 3 46674082 46678139 GST