Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2139 ATGGAACAATCGCTTTTGGATGACATAATCAATCGCCTCCTCGAAGTTCCTACCCTACCGGCTAAGCAGGTTCAGCTATCCGAGTCCGAGATCCGTCAACTCTGCGTAGTTTCCAGAGAAATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCACCTATTAAGATTTGTGGTGATGTACATGGGCAATATTCTGATCTTTTAAGGCTTTTTGAGTACGGTGGATTACCTCCTGAAGCCAACTATTTGTTTTTGGGGGATTATGTTGATCGAGGGAAGCAGAGTTTAGAAACAATTTGCCTCCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCTTGTTAAGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGATTTTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGACTGCTTCAATTGCCTGCCTGTGGCAGCCCTTGTCGATGAAAAGATTTTGTGTATGCATGGGGGACTTTCTCCCGACTTAAATAATTTGGACCAAATTAGAAATTTACAGCGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTGCTTTGGTCTGACCCGAGCAAAGATGTTCAAGGATGGGGAATGAATGACAGAGGAGTTTCATACACATTTGGTGCTGATAAGGTCTCACAATTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCTCATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACGCTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAGCAAAGCTCAATTTTGGAAGTACAACCACTGCTAAGCCTGGAAACTCTCCAGCAGGTGTAAAGGTTGGAAGATATTAG 972 0.4084 MEQSLLDDIINRLLEVPTLPAKQVQLSESEIRQLCVVSREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPDLNNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSQFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNFGSTTTAKPGNSPAGVKVGRY* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2139 323 CDD MPP_PP1_PPKL 6 294 - -
Gso3g2139 323 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 319 - -
Gso3g2139 323 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Gso3g2139 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 319 - -
Gso3g2139 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Gso3g2139 323 Gene3D - 1 305 IPR029052 -
Gso3g2139 323 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Gso3g2139 323 SUPERFAMILY Metallo-dependent phosphatases 21 299 IPR029052 -
Gso3g2139 323 SMART pp2a_7 26 296 IPR006186 GO:0016787
Gso3g2139 323 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Gso3g2139 323 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Gso3g2139 323 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Gso3g2139 323 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Gso3g2139 323 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Gso3g2139 323 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Gso3g2139 323 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2139 Gso-Chr3 46659967 46665608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2139 19 242 Calmodulin-binding Proteins AT5G63870 29.588 7.05e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2139 K06269 - gmx:100808597 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2093 19 49480971 49487139 Gso3g2139 3 46659967 46665608 GST