Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2126 ATGACACTTGTCATTTGTCAATGTTTGCCTTTAACTAACGGACAGACAAAGCTGATTCACTTAGGAGCCTCGAGAGCTATGTCTACATCTTCTCGTGTTCTTCCCACTCCATTGGAAAACAAGTATATGAAACCCCCAGATTCTTTTCAGCTTTCGCCAGTCAGAGATCTGACTGCAAATTCAGCCTCATCAAATTCAATCAGAAGTGCTGGGAAGATGTTTTCTTCACCTTCTAAATGTCCCGATGACTTCCCTTTTTCCTCTGTTTCACAGCATGATAGGCAATATCAAGATCCCCCCTTTGTTTCTCAGACAATTGGTGATAGCGTGTCTTCCGAAATACATTCAATGACATTCATTTCTCACCCTCAAGAAAATGAAGATCTTTCCTGGGGACCAGATCCATGTCAGGATATTCTTGGCTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAACAATGGTTGTTACATAAATGATGATAATGTCAAAAGATCTGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGATGATTCTCTTCACCCGAGCTGGAGTCAGCTTCTTGCTGATGACAATGTAGCAGAACCAAAACCAAAGGCATCTCAGGTTCCTCCGCAGCAGCATATACCATCTGGAGAAGTTGTTGGTAATTCAGCATCAACTGCATCGCAGACTAAGGCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTTAATCACCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAATCAAATGAAAGTTGAAGGTCTTACTATCTATCATGTAAAAAGCCACTTGCAGAAGTATAGAACTGCCAGATACAAACCAGAGCCATCAGAAGGAACGTCTGAGAAAAAGGTGACTCCAATGGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGTTTACAGATGGAACTCCAGAAGCGACTTCACGAACAACTTGAGATCCAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAGAGAGAGATGGGTGACAGCAAGGTTAACGTCTCCTTGGACGAGCCTTCTGCTGCTGCACCATCAGAAACAGTAGAAACCACAAATGAGGAACGCCACAAATTTGAAAGCATTCCAAAAGCCATACCCGAAGAGAAGGAGTCAAGCACAACAAAACAAATTGCAGGTGAAGCTGAAGAAATGATCAAGGAAGATGAAGTTGCACCACCCACAAAACGGGTGAAAAGTTCGTAA 1308 0.4258 MTLVICQCLPLTNGQTKLIHLGASRAMSTSSRVLPTPLENKYMKPPDSFQLSPVRDLTANSASSNSIRSAGKMFSSPSKCPDDFPFSSVSQHDRQYQDPPFVSQTIGDSVSSEIHSMTFISHPQENEDLSWGPDPCQDILGFPENVSVQHDQVENNGCYINDDNVKRSDFGEWVDQLMSIDDSLHPSWSQLLADDNVAEPKPKASQVPPQQHIPSGEVVGNSASTASQTKARMRWTPELHEAFVEAVNHLGGSEKATPKGVLNQMKVEGLTIYHVKSHLQKYRTARYKPEPSEGTSEKKVTPMEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDSKVNVSLDEPSAAAPSETVETTNEERHKFESIPKAIPEEKESSTTKQIAGEAEEMIKEDEVAPPTKRVKSS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2126 435 Pfam Myb-like DNA-binding domain 232 283 IPR001005 -
Gso3g2126 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 287 IPR017930 -
Gso3g2126 435 Gene3D - 229 288 - -
Gso3g2126 435 MobiDBLite consensus disorder prediction 371 435 - -
Gso3g2126 435 Coils Coil 318 338 - -
Gso3g2126 435 MobiDBLite consensus disorder prediction 208 222 - -
Gso3g2126 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 28 435 IPR044848 GO:0003700
Gso3g2126 435 MobiDBLite consensus disorder prediction 199 222 - -
Gso3g2126 435 SUPERFAMILY Homeodomain-like 228 284 IPR009057 -
Gso3g2126 435 Pfam MYB-CC type transfactor, LHEQLE motif 317 361 IPR025756 -
Gso3g2126 435 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 28 435 - -
Gso3g2126 435 MobiDBLite consensus disorder prediction 384 435 - -
Gso3g2126 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 230 284 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2126 Gso-Chr3 46535323 46539637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2126 19 404 G2-like Transcription Factor Family AT4G28610 42.131 1.34e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso3g2126 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2126 - - gmx:100803267 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2083 19 49363648 49367746 Gso3g2126 3 46535323 46539637 GST
Gso3g2126 3 46535323 46539637 Gso10g0340 10 3617827 3624380 PCT