Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2124 ATGGACAGTTCAAGTCAAATGTTAAGTGCAGAAGACAATAAAATATCACCAAAGACATTTGAACAGAAAATCATTGAGCCATCTCAAACATTCATGAAAGATATTAAGCCCAAAACCAGTTCACAAGCATCACATACAATGTTGAGTGAGGTAGAAAAGATCTCAAATTTACCTCGTGTGGCAGCTAAAGATAGAAAATCATACCCTGAGAATGCATCATCTGCAGTTGAGAAAGTGCTAGTGAAGCCAAGAACTAAGAAACTCAAGATGCAACTTGCTTCAACGAATCATATTGGTTTACCTGATGCGTCGGATGAAAAACTGTGTCTCAAACCTCTGTCAACTCAGGATCAGGATATGGAAAGTAAAGATGATGTTATATCCGCCTGCGACCGTAATACCCCAGCTTATAATGGAAATATTACGATTGCTAGTTCTTCACGTCTGGGAGAAGTAAAAATATCTTTGAATTGTGACTCTGCGTTGGGACAACCAAACTTCAGTATTCCTAATTTGGATATTGTTATGAAGTTCATGGACAAGAAGTACATTCGCTCTTGCAACACTGTTGAGCCTCAATTTTCTATGGCAAAGCTATTGGATGACCTTTGCAGGATTTATCTCAAGTTGGGATATCGAAAGGGATCAAATTCCAAGCGTGCCAATTTACAGCAATATGTTAATCAAGGTGAAAGGAATCCCTTTCGTTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAAACTGGCAGTGAAGACTTGCCAAAGTTTAATTACATACCATGTAATATAACTTATCAAAGTGCTAATGTAAATATTTCTTTGGCTCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCAACTGTCTTTCCTCACCATTGCCTTGTGCATGTGCTCAGGAAACTGGTGGAGAGTTTGCTTACACTCCTCATGGTTTGTTGAAAGAAGAATTTTTAACAGCTTGTGTATCTATGAAGAATGAACCTCAAGACCATCATTATGTGTACTGTCAAGAGTGCCCTTTGGAGAAGTCCAAGAATGAGTACATGCCCGAACGATGCAAGGGCCATATGGTTAGAAAATTTATAAAGGAATGTTGGAGAAAATGTGGATGTGACATGCAATGTGGGAATCGGATAGTGCAACGGGGCATAGCATGCAAATTGCAGGTGTTTTCAACTCGTGAAGGAAAAGGCTGGGGCCTTAGAACGTTAGAAGATTTACCAAAAGGAACTTTTGTATGTGAATATGTAGGAGAAATATTAACCAATATGGAGTTATATGAGAGGATTATGCAGGATACTGGCAACGAGAGACATACATATCCTGTAACTCTTGATGCGGACTGGGGCTCAGAACAGGGGTTAAAGGACGAGGAGGCACTATGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGATCATCATTATTATCATCTTGCCTTCTTCACCAACAGGACAGTGAGTGCAAATGAGGAGTTGACATGGGATTATGGTATTGATTTTGATGATCACGACCATCCTATTAAAGCATTTCGGTGTTGTTGTGGAAGCGTCTTTTGCTGTGATAAGAAACAAAAAGGAAAAGGAAAAATAGAAAATCAGATTAATGTAACAAGAGGGATGTCTGAACTCAAACAATTGGAGTAA 1743 0.3878 MDSSSQMLSAEDNKISPKTFEQKIIEPSQTFMKDIKPKTSSQASHTMLSEVEKISNLPRVAAKDRKSYPENASSAVEKVLVKPRTKKLKMQLASTNHIGLPDASDEKLCLKPLSTQDQDMESKDDVISACDRNTPAYNGNITIASSSRLGEVKISLNCDSALGQPNFSIPNLDIVMKFMDKKYIRSCNTVEPQFSMAKLLDDLCRIYLKLGYRKGSNSKRANLQQYVNQGERNPFRFISDITKGSEKVKISLIDETGSEDLPKFNYIPCNITYQSANVNISLARISDEGCCSDCSGNCLSSPLPCACAQETGGEFAYTPHGLLKEEFLTACVSMKNEPQDHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCDMQCGNRIVQRGIACKLQVFSTREGKGWGLRTLEDLPKGTFVCEYVGEILTNMELYERIMQDTGNERHTYPVTLDADWGSEQGLKDEEALCLDATKNGNVGRFINHRCYDANLIDIPVEIESPDHHYYHLAFFTNRTVSANEELTWDYGIDFDDHDHPIKAFRCCCGSVFCCDKKQKGKGKIENQINVTRGMSELKQLE* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2124 580 ProSiteProfiles SET domain profile. 396 530 IPR001214 GO:0005515
Gso3g2124 580 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 3 567 - -
Gso3g2124 580 MobiDBLite consensus disorder prediction 1 20 - -
Gso3g2124 580 MobiDBLite consensus disorder prediction 1 15 - -
Gso3g2124 580 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 59 578 IPR025776 -
Gso3g2124 580 ProSiteProfiles Pre-SET domain profile. 294 393 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso3g2124 580 CDD SET_SETDB-like 262 530 - -
Gso3g2124 580 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 3 567 - -
Gso3g2124 580 Pfam Pre-SET motif 241 388 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso3g2124 580 Gene3D SET domain 241 555 IPR046341 -
Gso3g2124 580 SMART preset_2 238 380 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso3g2124 580 SUPERFAMILY SET domain 248 552 IPR046341 -
Gso3g2124 580 SMART set_7 396 536 IPR001214 GO:0005515
Gso3g2124 580 Pfam SET domain 408 530 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2124 Gso-Chr3 46526207 46531247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2124 237 552 Su(var)3-9 homologs AT5G04940 28.571 5.72e-31 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso3g2124 Pre-SET 3.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2124 - - gmx:100802372 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2081 19 49353117 49354667 Gso3g2124 3 46526207 46531247 GST
Gso3g2124 3 46526207 46531247 Gso10g0343 10 3642874 3650219 PCT