Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2108 ATGCAATATTCCAGTGCAAAAGGTCTCTTGCTACGTCTTGTTTGCAGTATCTTTGTTTTGTTGAATGGCATGCATGCTGGTGTTGCATGGAATGAGGAGCCAGGTTCTTTGATTTTGGGTTGTGGGTTGGATGGAGGGGGTGCCAAAGATGCTGATGGAAGAGAATGGAGCCCTGATAACAAGTTCTTGGGGCCAGAAGGTGGTTCAATCACATCCAAAGCCTCTTACCAAGATCCTTCTCTTATGTCTGAGATTCCATACATGTCAGCACGTGTTTTCTCATCTGAGGCAACATACAAATTCCCCATCCAACCCGATAAGCGCTATTGGCTCAGGCTCCATTTTTACCCAGCCCTTTATGAGAGTTTCAATCCCTCTGACTCATTTTTCTCCGTGACTGCAAATGGTGTTACCCTCCTCTCCAATTTCAGCGCCACAGCCACTTGTGAGGCCCTCTCACAGGCCTACATTGATAGAGAGTACTCCCTTGCGCCATTGAATTCAGAAGCCTTGACTCTCACTTTCAAGCCTTCTGATAAATACAATGGCACTTTCGCTTTTGTCAACGGCATTCAGCTCATCCCGATGCCCGAGTTGTTTGATTCCGGAGAATTGGTAGGGTATGCTGACCAAACCACGGATGTGAAGAGCTTGAATCTGCAAACCATGTTTAGGCTTAACGTTGGTGGACAGTACATTTCTCCAATCCAAGACTCTGGCCTTACAAGGATGTGGTATGATGACAGGCCTTACCTTTATGGTGGAGGCACTGGTGTCACCAACCAAGCCGAGAAGAACGTCTTAATCGACTACCAGACCATGCCAAAGTACATTGCTCCTTCTGATGTCTACTCCACATCAAGATCAATGGGGCCTGACAAGGATGTCAACTTGGGCTTCAATCTCACTTGGGTCTTCCAAGTCGATCCCAATTCCATGTACCTTGTTAGATTGCATTTCTGTGAATACCACTACTCCAAGGTCAATGAGATTGCTTTCGACATATTTGTCAACAACCAAACGGCACAAGCTCAAGCTGATGTGATAGGATGGACAGGAGGTAAGGGGGTGCCAACTTATAAGGACTATGTGATATATGTCCAAGATGGGGAGGCCGATGACATGCTTTGGCTTTCTCTTCACCCTTCACCTGACTCAAAGCCTGAGTTCTATGACGCCATACTCAATGGAGTGGAAATATTCAAGCTCAATGACACAGACTTGTCTGGTCCCAATCCTCAGCTTTCGGAGATGCTCCTCAAGCAGCAGAAAGAGGATGAGGAAGCAGGCTTCATTAGCCACAAAGCATATCATAAGCATGTTGTTATTGGTGGAGCTGCTGGAGGTGCTGCTGGTTTAGCTTTTATGGCTGCATTGTTCCTTGCCGTGTACAACAAGAAGAAGAGAGTTCCGGGGTCAGAGGGTCACACAAGCTGGCTTCCCATCTATTTGAACTCACACAGCAAATCCTCTTCGTCTGGGAAGAGTGTTACTAGCAGTGCCAACTTATCTGCCATGGCTCAAGGTCTTTGCCGCTACTTCTCCTTGCAGGAGATAACGCAAGCAACCAAGAATTTCGACGAGGCCAACGTCATTGGGGTTGGTGGATTTGGAAAGGTGTACAAGGGTGTCATTGATAATGGAATGAAGGTGGCAATCAAGAGGTCGAACCCGCAGTCAGAACAAGGAGTTAATGAGTTCCAAACGGAAATAGAGATGCTTTCCAAGCTGAGACACAAGCATTTGGTGTCCTTGATTGGGTTCTGCGAGGAAAATGATGAGATGTGCCTGGTTTATGACTTCATGGCTCTTGGCACCATGAGGGAACATCTTTACAAGGGCAACAAGCCTATGTCTACTCTATCATGGAAGCAAAGGTTGGAGATTTGCATTGGAGCTGCAAGAGGGCTTCACTACCTTCACACTGGGGCTAAGTACACCATCATTCATAGAGATGTCAAAACCACAAACATTCTCTTGGATGAAAACTGGAGTGCCAAGGTTTCAGATTTTGGCTTGTCAAAAACTGGTCCAAACATGAACACCGGTCATGTTAGTACTGTGGTGAAGGGTAGTTTTGGCTACTTGGATCCTGAATACTTCAGGAGGCAACAATTGACTGAAAAATCTGATGTATACTCATTTGGGGTTGTTCTGTTTGAAGCCCTGTGTGCCAGGCCAGTTCTCAATCCTAGCCTTCCAAAGGAACAGGTTAGTCTTGCTGATTGGGCATTGCTTTGCAAGCAGAAAGGAACTCTAGAGGATCTCATTGACCCGTGTCTCAGGGGAAAGATCAATCCAGAAAGCTTGAATAAGTTTGTAGACACAGCTGAAAAGTGCTTGTCTGATCATGGTACTGATCGTCCCTCCATGAATGATCTCTTGTGGAATCTCGAATTCGCTCTCAACCTGCAAGAAAACGTTGAAGGTGGTTCAACTCATTCTGCTCGTGCTCAGGAAAGTGATTTTGAAGATGTAAGCTTGGGAGACAACGACATGGCACGCCACTATAAAAACTTAAGCCTTGGAAGTGACCTGGACCTTAGCGACGATTCTAATGAGAACCCGAATGCCATCTTCTCAGAACTTGCGAGTCCAAAAGGACGATGA 2610 0.4617 MQYSSAKGLLLRLVCSIFVLLNGMHAGVAWNEEPGSLILGCGLDGGGAKDADGREWSPDNKFLGPEGGSITSKASYQDPSLMSEIPYMSARVFSSEATYKFPIQPDKRYWLRLHFYPALYESFNPSDSFFSVTANGVTLLSNFSATATCEALSQAYIDREYSLAPLNSEALTLTFKPSDKYNGTFAFVNGIQLIPMPELFDSGELVGYADQTTDVKSLNLQTMFRLNVGGQYISPIQDSGLTRMWYDDRPYLYGGGTGVTNQAEKNVLIDYQTMPKYIAPSDVYSTSRSMGPDKDVNLGFNLTWVFQVDPNSMYLVRLHFCEYHYSKVNEIAFDIFVNNQTAQAQADVIGWTGGKGVPTYKDYVIYVQDGEADDMLWLSLHPSPDSKPEFYDAILNGVEIFKLNDTDLSGPNPQLSEMLLKQQKEDEEAGFISHKAYHKHVVIGGAAGGAAGLAFMAALFLAVYNKKKRVPGSEGHTSWLPIYLNSHSKSSSSGKSVTSSANLSAMAQGLCRYFSLQEITQATKNFDEANVIGVGGFGKVYKGVIDNGMKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEENDEMCLVYDFMALGTMREHLYKGNKPMSTLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWSAKVSDFGLSKTGPNMNTGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVLNPSLPKEQVSLADWALLCKQKGTLEDLIDPCLRGKINPESLNKFVDTAEKCLSDHGTDRPSMNDLLWNLEFALNLQENVEGGSTHSARAQESDFEDVSLGDNDMARHYKNLSLGSDLDLSDDSNENPNAIFSELASPKGR* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2108 869 Gene3D Transferase(Phosphotransferase) domain 1 602 821 - -
Gso3g2108 869 Pfam Malectin-like domain 40 402 IPR024788 -
Gso3g2108 869 MobiDBLite consensus disorder prediction 845 869 - -
Gso3g2108 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Gso3g2108 869 Pfam Protein tyrosine and serine/threonine kinase 530 795 IPR001245 GO:0004672|GO:0006468
Gso3g2108 869 CDD STKc_IRAK 532 799 - -
Gso3g2108 869 Gene3D Phosphorylase Kinase; domain 1 486 601 - -
Gso3g2108 869 SMART serkin_6 526 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2108 869 Gene3D - 40 196 - -
Gso3g2108 869 Gene3D - 218 404 - -
Gso3g2108 869 MobiDBLite consensus disorder prediction 845 860 - -
Gso3g2108 869 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Gso3g2108 869 ProSiteProfiles Protein kinase domain profile. 526 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2108 869 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 856 - -
Gso3g2108 869 SUPERFAMILY Protein kinase-like (PK-like) 505 801 IPR011009 -
Gso3g2108 869 PANTHER OS07G0166700 PROTEIN 23 856 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2108 Gso-Chr3 46383168 46386562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2108 37 869 Receptor kinase-like Gene Family AT3G51550 51.716 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gso3g2108 Malectin_like 1.8e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2108 - - gmx:100798646 1692.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2069 19 49248467 49251784 Gso3g2108 3 46383168 46386562 GST
Gso3g2108 3 46383168 46386562 Gso10g1494 10 41327004 41330318 PCT
Gso10g1494 10 41327004 41330318 Gso3g2108 3 46383168 46386562 PCT