Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2106 ATGGCTCCCGATGCTTCCGACGCACTTGCAGCGAGGCAGAAAGTTCAATTGTTTCTGAACGCTGCTCGAACTGGATCAATTGATCTCTTAAAGAAATTGGCGTTGCAGCTGGACGAGGGTAAGGATTTGGCGAAATCGGTGGAAGCAATAAAGGACGCCAACAAGAGAGGTGCACTGCATTTTGCCGCGCGCGAAGGCCAAACCGCTGTTTGCGACTACCTCTTAACCGATTTGAAGCTCTCTGTCGATTCTCAAGATGATGATGGGGAGACTGCACTCATTCATGCTACTCGTCAGGGACATACCGCCACTGCTAAATATCTAATTGACCACGGTGCCGATCCTACCGTGGCTAGCAATTTAGGGGCTACGGTATTACACCATTCTGCAGGGATAGGGGATACTGAACTGCTCAAGTACTTGCTGTCCAGGGGAGTTAATCCTGATCTAGAGAGTGACTCGGGAACACCTTTGGTTTGGGCTGCTGGCCATGCCCAACCAGCTTCTGTCAGTGTACTATTGGAACATGGTGCAAATCCAAATGCTGAAACTGATGATGGTATTACTCCACTCCTTTCAGCTGTGGCAGCCAGTTCTCTGGCATGCTTAGAGCTGTTAATTCAGGCAGGTGCTAAAGTAAATATAAGTGCTGGTGGAGCAACTCCTTTGCACATCGCAGCTGATAATGGAAGTCTTGAACTATTAAATTGCTTATTGAAAGCGGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTCAAGCCAATACAAGTTGGTGCTGCAAGGGGCTATCTAAAAGCTGTTGAGATATTGTTCCCCTTGACATCCAAAGTAGATACTATTCCTACTTGGACTGTTGATGGGATACTCGAGTATATGCAATCTGAAACTAGAAAGCAGCTGGATGAATCGATAAATGACAAAGAAACTAATCAGCCCAAGGAAGCTGATTTTCCAAAGCAAAATGTCCCCGAGGTGGCACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAGTCAAGAGGGGATGAGGCTTTTAAAAGAAATGACTATCATATGGCTATAGATTCTTATACCCAAGCAATTGATCTGAACCCCACTGATGCTACTTTGCTATCCAATAGAAGTCTTTGTTGGATTAAGTTGGGTCAAGCTGAGCATGCTTTAGCTGATGCAAAGGCTTGTAGAGCTTTAAGACCAGATTGGCCAAAAGCTTGTTATAGGGAAGGGGCAGCTCTGCGTTTGTTGCAGAAATTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAAAGCTTGATCCTGAAAATAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTCGAGGCTGGGAGGAAATTTCATGGAACTACTGAAAATAAATCATAG 1383 0.4526 MAPDASDALAARQKVQLFLNAARTGSIDLLKKLALQLDEGKDLAKSVEAIKDANKRGALHFAAREGQTAVCDYLLTDLKLSVDSQDDDGETALIHATRQGHTATAKYLIDHGADPTVASNLGATVLHHSAGIGDTELLKYLLSRGVNPDLESDSGTPLVWAAGHAQPASVSVLLEHGANPNAETDDGITPLLSAVAASSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELLNCLLKAGADPNVSDEDGVKPIQVGAARGYLKAVEILFPLTSKVDTIPTWTVDGILEYMQSETRKQLDESINDKETNQPKEADFPKQNVPEVAPEAKKRAAESKSRGDEAFKRNDYHMAIDSYTQAIDLNPTDATLLSNRSLCWIKLGQAEHALADAKACRALRPDWPKACYREGAALRLLQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGTTENKS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2106 460 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Gso3g2106 460 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 457 - -
Gso3g2106 460 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Gso3g2106 460 ProSiteProfiles Ankyrin repeat region circular profile. 186 215 - -
Gso3g2106 460 Pfam Tetratricopeptide repeat 403 435 IPR019734 GO:0005515
Gso3g2106 460 Pfam Tetratricopeptide repeat 341 367 IPR019734 GO:0005515
Gso3g2106 460 SUPERFAMILY Ankyrin repeat 18 272 IPR036770 -
Gso3g2106 460 MobiDBLite consensus disorder prediction 326 342 - -
Gso3g2106 460 Gene3D - 154 321 IPR036770 -
Gso3g2106 460 Gene3D - 4 153 IPR036770 -
Gso3g2106 460 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Gso3g2106 460 SMART tpr_5 402 435 IPR019734 GO:0005515
Gso3g2106 460 SMART tpr_5 368 401 IPR019734 GO:0005515
Gso3g2106 460 SMART tpr_5 334 367 IPR019734 GO:0005515
Gso3g2106 460 Gene3D Tetratricopeptide repeat domain 332 447 IPR011990 GO:0005515
Gso3g2106 460 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Gso3g2106 460 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Gso3g2106 460 SUPERFAMILY TPR-like 333 445 IPR011990 GO:0005515
Gso3g2106 460 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Gso3g2106 460 MobiDBLite consensus disorder prediction 301 315 - -
Gso3g2106 460 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Gso3g2106 460 MobiDBLite consensus disorder prediction 301 342 - -
Gso3g2106 460 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Gso3g2106 460 SMART ANK_2a 153 182 IPR002110 GO:0005515
Gso3g2106 460 SMART ANK_2a 218 247 IPR002110 GO:0005515
Gso3g2106 460 SMART ANK_2a 54 84 IPR002110 GO:0005515
Gso3g2106 460 SMART ANK_2a 121 150 IPR002110 GO:0005515
Gso3g2106 460 SMART ANK_2a 186 215 IPR002110 GO:0005515
Gso3g2106 460 SMART ANK_2a 88 117 IPR002110 GO:0005515
Gso3g2106 460 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Gso3g2106 460 Pfam Ankyrin repeats (3 copies) 122 182 IPR002110 GO:0005515
Gso3g2106 460 Pfam Ankyrin repeats (3 copies) 186 249 IPR002110 GO:0005515
Gso3g2106 460 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Gso3g2106 460 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Gso3g2106 460 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2106 Gso-Chr3 46364861 46374812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2106 126 301 Ion Channels AT2G25600 29.609 3.69e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2106 - - gmx:100798118 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2068 19 49229113 49245887 Gso3g2106 3 46364861 46374812 GST