Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2104 ATGGAGGCAGAGCGAGACAAGTACAAGATGATCAACTTTGAAGAAACCGAGTTACGACTCGGCCTGCCACTCAGTGGAAACGAGACGCTCAAAAACACTTGCAGCACTGGGAAGAGGGTTTTTTCGGATACTGCCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAATAGTGCTTCTTCTGACCTGGCTAAAGAGAAGAACATCACTGCTGCTGCACCTCCTGCTAACGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTGGGGTGGCCACCAGTGAGGTCTTTCAGAAAGAACATTGTTCAAAGGAGTAACAACAATGAGGGCGAAAAAGCCGCCACAAGTAGTAGCAACAATGTGAACACGGGAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCTCCTTATTTACGCAAGGTGGATTTGAAGTTGTACAAGAGCTACCAAGAGTTGTTGGATGCGCTGGCTAAAATGTTCAGTTCATTCACCATTGACAAGTGTGGATCCCAAGGCATGAAAGACTTCATGAACGAGAGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTAGCACCAAGAGCAGTGGAAAAGTGCAAGAACAGAAGCTAG 732 0.4768 MEAERDKYKMINFEETELRLGLPLSGNETLKNTCSTGKRVFSDTAVDLKLNLSSTSNSASSDLAKEKNITAAAPPANDPAKPPAKAQVVGWPPVRSFRKNIVQRSNNNEGEKAATSSSNNVNTGAAFVKVSMDGAPYLRKVDLKLYKSYQELLDALAKMFSSFTIDKCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDADWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2104 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 236 IPR003311 GO:0005634|GO:0006355
Gso3g2104 243 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 236 - -
Gso3g2104 243 Pfam AUX/IAA family 34 234 IPR033389 -
Gso3g2104 243 Gene3D - 119 237 - -
Gso3g2104 243 SUPERFAMILY CAD & PB1 domains 116 224 - -
Gso3g2104 243 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2104 Gso-Chr3 46357206 46359770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2104 122 228 B3 DNA Binding Superfamily AT3G61830 32.710 1.36e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso3g2104 AUX_IAA 8.7e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2104 K14484 - gmx:100796888 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2065 19 49214851 49217280 Gso3g2104 3 46357206 46359770 GST