Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2094 ATGGAGAGCGCACTGCCCAGTCATGGAGACAAATCACTACAAGAATTCTTCAAAGTTTTCCTGCTCAGGACAGGTTCTACCAAGTTGCAAATACCAACATCTTTCACCAAGTTCTTCAATGGAGTCTTACCATTGAAGGTCACTCTTGTAGATCACGATAGAAAATCTTGGGATGTTTACTTGGAGAAAACCGAGGGTTGCTTGGTTTTTAAAGATGGGTGGCAGCAATTTGCCAAGGAGAAAGTTTTAGAAGATGGGGATTTCTTGGTTTTTCAGTATGATGGCAGGTCTACGTTTAATGTGAAGATATTTTCGAAAACTGGGTGCAGGAAAGTAGCTGCCCCTGCAAGTAGTGCAAAAATTGAACCCACTGTGATTTTGGATGAAGATTCTGATCAGCGTTGTAGTAAAGAAATCCAGTGCGGTCGTAAACGGAAACAGTCACCGCCTAGTCTCAAAACAAATGAGGAATCAGTGTTAGAAGGTCCATGTCCATCCGAAGGAGCTCGGTTCAAATCAAAAAGAGTTTATGAAGAAAAGGATGACCACAATGAGAAGAAACCTGATCCAACAAAGTGTGTTCCATTACAGAATTCTCATCATTTTCAGATATATTTTAATGCTCCCTGGAGACTGAAAAAAGTGGAAATTCCTAGAAGTGTGCTGAGGAAAACGAATATCAAGCTAATGTCGAAGATAAGTCTGAGAGATGAGAATGGCAAATTATGGCCCGCGTCGATCATATCCATAAAGAAAGAATATCGTCATTTTTTGGGAGGTGGATGGAATGATTTCCGGCGGAGTTACAATATTCAAGAAGGGGACCGATGTGATTTTGAGTTTGTTGTTGATAAAGCAAACGCAGCCCAAGAACTGCTAGTTCGCGTACGTTCAAAATGTTCATTTGGTTGGGTGGACTGCAAATAA 927 0.4099 MESALPSHGDKSLQEFFKVFLLRTGSTKLQIPTSFTKFFNGVLPLKVTLVDHDRKSWDVYLEKTEGCLVFKDGWQQFAKEKVLEDGDFLVFQYDGRSTFNVKIFSKTGCRKVAAPASSAKIEPTVILDEDSDQRCSKEIQCGRKRKQSPPSLKTNEESVLEGPCPSEGARFKSKRVYEEKDDHNEKKPDPTKCVPLQNSHHFQIYFNAPWRLKKVEIPRSVLRKTNIKLMSKISLRDENGKLWPASIISIKKEYRHFLGGGWNDFRRSYNIQEGDRCDFEFVVDKANAAQELLVRVRSKCSFGWVDCK* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2094 308 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Gso3g2094 308 Pfam B3 DNA binding domain 214 298 IPR003340 GO:0003677
Gso3g2094 308 PANTHER B3 DOMAIN-CONTAINING 6 297 - -
Gso3g2094 308 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Gso3g2094 308 SMART B3_2 16 107 IPR003340 GO:0003677
Gso3g2094 308 SMART B3_2 202 300 IPR003340 GO:0003677
Gso3g2094 308 MobiDBLite consensus disorder prediction 139 167 - -
Gso3g2094 308 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 6 297 - -
Gso3g2094 308 CDD B3_DNA 16 105 IPR003340 GO:0003677
Gso3g2094 308 SUPERFAMILY DNA-binding pseudobarrel domain 200 282 IPR015300 -
Gso3g2094 308 CDD B3_DNA 211 282 IPR003340 GO:0003677
Gso3g2094 308 ProSiteProfiles B3 DNA-binding domain profile. 217 298 IPR003340 GO:0003677
Gso3g2094 308 SUPERFAMILY DNA-binding pseudobarrel domain 15 109 IPR015300 -
Gso3g2094 308 Gene3D - 194 299 IPR015300 -
Gso3g2094 308 Gene3D - 7 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2094 Gso-Chr3 46273721 46276472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2094 11 298 B3 DNA Binding Superfamily AT5G66980 32.911 4.65e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso3g2094 B3 3.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2094 - - gmx:102669908 637.876