Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2091 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATCCGCCTTGCCCGCCAAACAGAGCGCTCTCGTAGGTCTGCACACCTGGAGATGGAGCTCCTCTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTGTGCATTATTATAGGTTATTGTAAAGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGTGTTATGTTTCCTGAGGAGAAACTATGTAAATGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCATGTGAACCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAAATCATGACATACGCCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTTCTTGCTGATATACCTTATGGCTCTAAATCGGATATTTGGTCCTTGGGATGTTGTATATACGAAATGACCTCACTTAAGCCTGCATTCAAAGCATTTGATATACAAGCCCTGATTAACAAGATCAATAAGTCCATAGTGGCCCCATTGCCAACAAAATATTCTGGGTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTTGGGCACCATCATCTTCAGCCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACATTGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGAAGTCTGAAGATGATCATGTTTCCCTCTCTGGGAATAAGTGGCATTCTTTTAGCTATGATCGGACTTTAAATCCTAGTGTATCAGGAGCAGAGCAAGATTCTCTATGCTCTACGCTAGAGATTGATTGTACTCCTGATAATTTAAATCAAAGATTTGCTGAACTTTCTGTTGGAGACAACCCCGATGTAAAGTCACTCCATAAGCCAGCTGTTTCCAGAACTTCTATTAATGCCAAGACTCCTAGATTAGCTGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGGTATTCTCAAAGAATCATAAGACGCTTCCTGTTTCATACAATACGAAAGAACCTGTCCATACAACTCGCAGAGCATCATTGCCATTCCCAAGAAGTTGTGCCATACAGCAGCCTCCTCGCAGGCCCAGTATTGGTTTACTTGACCATGTAAATTCACCAAATATTTCAGTTAACTCTCCCCGTATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGATCAATTGTTTCCCATCAATAGATCTTCTCCAAACTCGGCACAGGGTTCCGCAGGCTCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGATGTACGGATGCTTGGCAGGGAATCAAGCGCAGCAGGTTCAAGAAAAATGATGAGGATAAAAGTGGCTCATCTGATCAAAATGCAACTACTGGAGCATCAAGCCACAACTCTTCAGACTTGCGCCGCCGACAGTTTGATACATCGTCATTCCGACAAAGGGCTGAGGCCTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGGAGAACTAGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCGAGGGAAACTGCCATTTGGTTGAGCAAGAGTTTAAAGGAGAACACTTTTTCAGCAGGGAACAATTCACCTAAACTGCTGTAA 1863 0.4198 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCKGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKNHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSIVAPLPTKYSGSFRGLVKSMLRKNPELRPSAAELLGHHHLQPYVLKVHLKINSPRRSTLPESNYMKKTRFLKSEDDHVSLSGNKWHSFSYDRTLNPSVSGAEQDSLCSTLEIDCTPDNLNQRFAELSVGDNPDVKSLHKPAVSRTSINAKTPRLAASKASATPKKSMVFSKNHKTLPVSYNTKEPVHTTRRASLPFPRSCAIQQPPRRPSIGLLDHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQGSAGSPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKRSRFKKNDEDKSGSSDQNATTGASSHNSSDLRRRQFDTSSFRQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSLKENTFSAGNNSPKLL* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2091 620 Gene3D Transferase(Phosphotransferase) domain 1 86 309 - -
Gso3g2091 620 MobiDBLite consensus disorder prediction 527 542 - -
Gso3g2091 620 CDD STKc_Nek 3 258 - -
Gso3g2091 620 PANTHER SERINE/THREONINE-KINASE NEK4 1 601 - -
Gso3g2091 620 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso3g2091 620 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2091 620 SUPERFAMILY Protein kinase-like (PK-like) 1 307 IPR011009 -
Gso3g2091 620 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2091 620 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gso3g2091 620 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2091 620 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 601 - -
Gso3g2091 620 MobiDBLite consensus disorder prediction 517 549 - -
Gso3g2091 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2091 Gso-Chr3 46257769 46264556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2091 10 259 MAP Kinase Kinase Kinase AT1G53570 32.157 1.16e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso3g2091 Pkinase 2.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2091 K08857 - gmx:100796515 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2051 19 49092747 49099090 Gso3g2091 3 46257769 46264556 GST
Gso3g2091 3 46257769 46264556 Gso10g1474 10 41130904 41137172 PCT
Gso10g1474 10 41130904 41137172 Gso3g2091 3 46257769 46264556 PCT