Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2090 ATGTTCGATGGAGCACCGGACCAGTTCCACCAATTCATAGCACCAACAAGGACCACTCTTCCTCTCCACATGTCTTTCCCTCTCCACCATCATGCCTCTTCAACCCCTCCTCCAAATACCTTCCTACCCTTTGATCCATATAACCCTTCTTCTCATCATCATCACTTGCCATCACTCCAAACAAATCATCTCTTGCACCCATTGCACCCCCCTACTACTATTATTTCTCCCACTCCCACCCACAAACATGAACAAGACAAGGTTGCTCCAATCAACAACAACAACGACGTTGAGATTCAAAGAGATCAAAGGCAATTACCAGATCAGCTAACCGATTCCTGGACCAACGATGAAGTGCTTGCACTTTTTAGAATCAGATCTAGCATGGAAAATTGGTTCCCGGAGCTCACATGGGACCATGTCTCAAGAAAGCTAGCAGAGGTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTAGATATTTCGACAACATTAATAATAACTACGGAAAGAACAATTTCCGGTTCCTTATTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATCCTGGTGGTGGTGGTGATAATCATAATGGGGTTGAAAAGACTCACCACCTGGGAGGAGACAACATGGGCCACCACGCATTGGAAGAAAATAAAAGAGACATTGAAATAACTACAGCGACCAAACAATGTGATGACATTGTGGTGGAGAAGTCAAATATTTCAAAGGTGCGCAAGAGGAAGAGGCGTGATAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTGTCGTCAACAAGATGATGGCTCAGCAAGAAGAGATTCACAACAGGCTCCTCGAGGACATGCTCAAAAGGGACCAAGAGAAGTTCGCCAGAGAGGAGGCGTGGAAGAAGCAAGAGTTGGATAGGATGAACAAGGAGCTTGAGATTATGGCACAAGAGCAAGCCATTGCCGGGGGTAGACATGCCACCATAATTGAATTCTTAAAGAAATGCGCAACAACAACAACTTCATTATCATCCCCTCCAAGCCAAAATGCCAAGTACTACAAAACAAATGGTTCAAATCTTCCAAATTGTGCATTGCACCCGCAAAACCCTAATGATCCTTCCAATGAAGACAACAATCTTGAGCCAACACCTTCTCCTAAAATGATTCAAAATCATGATCAAGCTACGTTATTGGGAGCAGAAAACCCTAGCGCAAGTGACACATTACTACAAGTTCCTTCTTCCTCCAACTCTTCCCCAACACCCGGCCACAACCCTAGTTCTTCACTCAATAGCCACAATAACATTATCCCATTAGACTCAAATTCAGTTTCAACATATAAGCCCACCTCAACAACCCCTATGGCCAGTACCAGTGAGAATTCGAAAGATGATATTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCACTGATAAACCTGAGGTGCACAAGTCTAAGCAGCAGCAACAACAACAACAACAACAATGAAGAGAAAGAAGGAAACAATAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGCTGGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATAATGTTAATAAGAAAAGGTCCCTTAACTCTAGGACATGTCCTTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATCGTGCCACAGTCTGATGAAAGGGAAGGGAAAAACTACTTGAATCCAACCGCGAATTCCGGTGATCAAGTGCCACCGGATCATGATCAAGTCCAAGCTGATGAGTCTTCTCAAGTGGGGTCTGCTGCTTTGGTTCAGTATGCATGTTGA 1872 0.4423 MFDGAPDQFHQFIAPTRTTLPLHMSFPLHHHASSTPPPNTFLPFDPYNPSSHHHHLPSLQTNHLLHPLHPPTTIISPTPTHKHEQDKVAPINNNNDVEIQRDQRQLPDQLTDSWTNDEVLALFRIRSSMENWFPELTWDHVSRKLAEVGFKKSAEKCKEKFEDESRYFDNINNNYGKNNFRFLISELEELCQNPDPGGGGDNHNGVEKTHHLGGDNMGHHALEENKRDIEITTATKQCDDIVVEKSNISKVRKRKRRDRFEMFKGFCESVVNKMMAQQEEIHNRLLEDMLKRDQEKFAREEAWKKQELDRMNKELEIMAQEQAIAGGRHATIIEFLKKCATTTTSLSSPPSQNAKYYKTNGSNLPNCALHPQNPNDPSNEDNNLEPTPSPKMIQNHDQATLLGAENPSASDTLLQVPSSSNSSPTPGHNPSSSLNSHNNIIPLDSNSVSTYKPTSTTPMASTSENSKDDIGRRWPRDEVLALINLRCTSLSSSNNNNNNNEEKEGNNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQLSCLYGQGKIVPQSDEREGKNYLNPTANSGDQVPPDHDQVQADESSQVGSAALVQYAC* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2090 623 MobiDBLite consensus disorder prediction 342 393 - -
Gso3g2090 623 Gene3D - 474 544 - -
Gso3g2090 623 Gene3D - 114 170 - -
Gso3g2090 623 MobiDBLite consensus disorder prediction 490 511 - -
Gso3g2090 623 PANTHER - 14 617 - -
Gso3g2090 623 MobiDBLite consensus disorder prediction 584 612 - -
Gso3g2090 623 ProSiteProfiles Myb-like domain profile. 473 539 IPR001005 -
Gso3g2090 623 MobiDBLite consensus disorder prediction 409 465 - -
Gso3g2090 623 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 14 617 - -
Gso3g2090 623 MobiDBLite consensus disorder prediction 490 505 - -
Gso3g2090 623 Pfam Myb/SANT-like DNA-binding domain 112 177 IPR044822 -
Gso3g2090 623 Pfam Myb/SANT-like DNA-binding domain 472 566 IPR044822 -
Gso3g2090 623 MobiDBLite consensus disorder prediction 409 473 - -
Gso3g2090 623 MobiDBLite consensus disorder prediction 580 612 - -
Gso3g2090 623 ProSiteProfiles Myb-like domain profile. 106 165 IPR001005 -
Gso3g2090 623 CDD GT1 472 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2090 Gso-Chr3 46247513 46251092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2090 114 572 Trihelix Transcription Factor Family AT5G28300 40.551 1.47e-87 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso3g2090 Myb_DNA-bind_4 6.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2090 - - gmx:100795995 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2050 19 49082205 49085838 Gso3g2090 3 46247513 46251092 GST
Gso3g2090 3 46247513 46251092 Gso10g1473 10 41110507 41113033 PCT
Gso10g1473 10 41110507 41113033 Gso3g2090 3 46247513 46251092 PCT