Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2082 ATGGCTTCGGAGCAACACGACGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCTCAGGAGGACGAAGAGTACGAAGAAGACGACGACGAAGAAAACGTGCCCTCTCCCTCCACCGCTCTCGCTGTCACCGTCGCCGTCCCCGGTTCCGCCGTCTCCAACGGCGGCGGTGGCTCTCCAATTTCGAAGCCCACCGCCACCGCCACCACCGCCACCATCGTCCTCGCCGACTCATCCGATCCGAAGCGGCGTCGCCTGGAGCTAATCGAGGAGAAAAAGCCGCCGCCGCCGCTGGATGACTCGCGGCGGCTGTTTCAGCGGCTGTGGACCGATGAGGATGAGATCGAGCTCTTGCAAGGGTTCCTCGACTACACATCGCAGCGAGGATCCTCGCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCGAAGCTCCAACTCGATTTCAACAAGAATCAGCTCGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGGAACGTCCTCAACAAGATTTGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCTCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACGTGACTCCAGTCGGCGACAATTCATTGGACGACGACGAAATCAACCCTAGCCGTAGCCCCAACCCTAACCTTAATTTTAGCCCTGTAATTCTTAAGAATGAAACGATTTTCAGGAATTCCACGGAGAAGAAAACACCGAAACGCTCTCGGCCTCGATCGGCGGTGAAAATCGAGCCAAATGACGGATCCGCGTCGAACAGAGATCATAATTGTATTAGCAATACTACACCTACTGCTACTGCTGCTGCTACTAACACTACTGCTGCTGCTGCTGGTACTAACAATAATAACTGTAACAGTGGTTATGGAAATAACATACCGAGTTTGATTGAGGAGACGGTGAAGAGTTGTTTGTCGCCGGTGTTGAAGGAATTGATGGCAGGGGCCATGGGAGGAGGAGCGTTTGGAGGGAGAGGGTTTTCGTTGAACTTGAACCCTATGCCTTTTATGAATTTGAGTTTTGGCGGTGGGGAAATGGTGGATGAGAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAACTGGTGCAGGATCAGATCAAGGCAGCTATGGAGGAGTTGCGGTCACATGGAGGAGGAGGATTATAG 1215 0.5284 MASEQHDAVFREEDMDDDDDESQEDEEYEEDDDEENVPSPSTALAVTVAVPGSAVSNGGGGSPISKPTATATTATIVLADSSDPKRRRLELIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKICSGKEFSFKSAHDQATFEISRKIWSNVTPVGDNSLDDDEINPSRSPNPNLNFSPVILKNETIFRNSTEKKTPKRSRPRSAVKIEPNDGSASNRDHNCISNTTPTATAAATNTTAAAAGTNNNNCNSGYGNNIPSLIEETVKSCLSPVLKELMAGAMGGGAFGGRGFSLNLNPMPFMNLSFGGGEMVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSHGGGGL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2082 404 Coils Coil 375 395 - -
Gso3g2082 404 MobiDBLite consensus disorder prediction 240 258 - -
Gso3g2082 404 Coils Coil 156 176 - -
Gso3g2082 404 MobiDBLite consensus disorder prediction 1 68 - -
Gso3g2082 404 PANTHER BNAANNG10740D PROTEIN 1 400 - -
Gso3g2082 404 PANTHER BNAANNG10740D PROTEIN-RELATED 1 400 IPR007592 GO:0006355
Gso3g2082 404 MobiDBLite consensus disorder prediction 11 37 - -
Gso3g2082 404 MobiDBLite consensus disorder prediction 240 273 - -
Gso3g2082 404 Pfam Protein of unknown function, DUF573 108 202 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2082 Gso-Chr3 46183847 46185685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2082 1 403 GeBP Transcription Factor Family AT5G28040 42.889 2.30e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Gso3g2082 DUF573 3.5e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2082 - - gmx:100790030 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2041 19 49013437 49015168 Gso3g2082 3 46183847 46185685 GST
Gso3g2082 3 46183847 46185685 Gso10g1461 10 41017628 41019396 PCT
Gso10g1461 10 41017628 41019396 Gso3g2082 3 46183847 46185685 PCT