Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2067 ATGGGGTGTGTGATTAGCAGGGAAGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTGAGAGTAAGAGGAAGGTTGGTGGAGTGTCAGGGAGCAAAGGTGAGGTAGTGGAGGTTCAGAATGGTGAGAAGGAGAAGGGTGGTGAGGGGGTGCAGCGGTCTTGTGGCGAAAGGAGAAGATCGAAGGCGAATCCGAGGCTGAGCAATCCCCCGAAGCATTTGAGGGGGGAGCAGGTTGCAGCTGGGTGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGCGGCTGGATTCCGCGAAAGGCCGACACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACATGATGACAGGTAAAATTGTTGCCCTAAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACATCAAGGATGTCCTGTAGTTTGTATTTGGTGTTTGATTACATGGAGCATGATTTGGCTGGACTTGCTGCTAGCCCAGGAATCAGGTTCACAGAGCCTCAGGTTAAATGTTACATGCATCAGCTGTTATCAGGACTTGAGCACTGTCATAACCGTCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCTGACTTTGGACTGGCTTCTATTTTTGATCCAAACCATAAGCATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCCGGATGTATTTTAGGAGAGTTATTGGCTGGGAAGCCAATCATGCCTGGTCGTACAGAGGTGGAACAATTGCACAAGATATACAAACTATGTGGTTCACCTTCAGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTCGTTTAAACCACGAGATCCATACAAGAGACACATAAGAGAGACATTTAAAGATTTTCCACCTTCTGCTCTACCCCTCATTGATACACTTCTTGCAATTGATCCGGTAGAACGGAAAACTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTCCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGACGGGATGATGAAATGAGAAGAGTAAGAGCTGCAGGCAAAGCTCAGGCTGATGGTCCAAAGAAGCATCGAACACGTAATCGTGCTGCAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAAGTTGGTTTTCCTTTGGGATCTTCACATCACATTGATCCAGATACCGTTCCTACTGATGTCTCTTTTACTTCAACCTCCTATACTTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGTAATGCGGCTGACATTGGAGTGCCAAAGCGGAAGAAACACACTGCAGCTGATGCATTGGACTTATCTAAACCACAGAAAGATGCCCTCAAGGATAAGGTTAAAGGAAAGAAAAGTATAGCTTAG 1722 0.4506 MGCVISREVSKGIISEVKEEKGLSGESKRKVGGVSGSKGEVVEVQNGEKEKGGEGVQRSCGERRRSKANPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATSFKPRDPYKRHIRETFKDFPPSALPLIDTLLAIDPVERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRVRAAGKAQADGPKKHRTRNRAAKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQVGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAADALDLSKPQKDALKDKVKGKKSIA* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2067 573 MobiDBLite consensus disorder prediction 403 503 - -
Gso3g2067 573 MobiDBLite consensus disorder prediction 413 442 - -
Gso3g2067 573 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2067 573 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2067 573 PANTHER CELL DIVISION PROTEIN KINASE 52 550 - -
Gso3g2067 573 MobiDBLite consensus disorder prediction 539 573 - -
Gso3g2067 573 Gene3D Transferase(Phosphotransferase) domain 1 194 434 - -
Gso3g2067 573 MobiDBLite consensus disorder prediction 43 69 - -
Gso3g2067 573 CDD STKc_CDK9_like 111 395 - -
Gso3g2067 573 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2067 573 MobiDBLite consensus disorder prediction 524 573 - -
Gso3g2067 573 MobiDBLite consensus disorder prediction 462 484 - -
Gso3g2067 573 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Gso3g2067 573 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Gso3g2067 573 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Gso3g2067 573 PANTHER OS01G0367700 PROTEIN 52 550 - -
Gso3g2067 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Gso3g2067 573 MobiDBLite consensus disorder prediction 17 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2067 Gso-Chr3 46044847 46050248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2067 103 454 Core Cell Cycle Gene Families AT5G10270 50.000 7.07e-124 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso3g2067 Pkinase 2.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2067 K08819 - gmx:100786837 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g2067 3 46044847 46050248 Gso10g1447 10 40867111 40873683 PCT
Gso10g1447 10 40867111 40873683 Gso3g2067 3 46044847 46050248 PCT