Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2050 ATGGTCCCAATTGACCCCGCTTTCAACGACAAGCACAAAAAACGAGGCATTGTGTATACTTGCCCTGCTTCTGTTTCTGCCCAAGATTTGGGAGAATTTGATTTGGAGAAAGAGAAAAGTGTGGTAACTCTAAAAGAACTTTTAGAAGACTGCATTAGAGATACTGACAACTCTCAACAACTATCTGAATTGGCTGTTAGTTGTCCAAGCTTAAGGACACAGTTTTATTGGAGCAAGTTTTTGAAACTATGGAAAAGAAGATCTTTTAAGCACCTACCATCTTTTCCTCCGAGTTGTGTGCCAAACATAACAAAGACTAAAAACAGAACCATTCAAGAAATTTCTGTTGTATGTAATTCATACTGTTCCAGAACTTTGATGAATTTTAGTCTCGATAACCTGAGAAATGCAACCAACAATTTTAGCAATGAGAATATGATTGGAAGAGGTGGCTTTGCTGATGTTTACAAGGGTAGCCTCCAAGATGGACAACTAATAGCAGTTAAGCGACTGAATAAAGGGACTCCAGAAAACAGAACATCAAGCTTTCTGTCTGAGCTAGGCATTCTTGCTCATGTTGATCATCCTAACACTGCCAAACTTATTGGATGTGGAGTAGAAGGAGGAATGCACCTTGTCTTCGAACTATCTCCACTGGGAAATTTAGGGTCTCTTCTTCATGGTCCAAATAAAAATAAATTAGATTGGAGTAAAAGGCATAAAATTATTATGGGGATAGCGGATGGCCTTCTTTATCTTCATGAGATTTGTCAAAGGCGAATCATTCATAGAGACATTAAAGGAGAGAATATTTTGCTCACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAATGGTTACCAGAACTGTGTACTCACCGTAATGTATCAAAATTTGAAGGCACAATGGGGTATTTAGCTCCTGAATATTTTATGCACGGCATAGTAAGCGAGAAAACTGATATTTATTCCTTTGGGGTCTTGCTTTTGGAGATTATAACCGGGCGTCATGCTTTGGATCATCTGAAGCAAAGTATTGTGTTATGGGCCAAGCCTTTATTTGAAGCCAATAACATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACCGGGAACAAATGGATCGTGTTGTTTTGACTGCATCTCTGTGTGTTGAGCAGTATCCTATCTTACGCCCCAGCATGAGTCAGGTTGCAATACTGCTAAGAGGTGATGACTTTGTGCTGGAACATAGGAGTCACTAG 1260 0.3944 MVPIDPAFNDKHKKRGIVYTCPASVSAQDLGEFDLEKEKSVVTLKELLEDCIRDTDNSQQLSELAVSCPSLRTQFYWSKFLKLWKRRSFKHLPSFPPSCVPNITKTKNRTIQEISVVCNSYCSRTLMNFSLDNLRNATNNFSNENMIGRGGFADVYKGSLQDGQLIAVKRLNKGTPENRTSSFLSELGILAHVDHPNTAKLIGCGVEGGMHLVFELSPLGNLGSLLHGPNKNKLDWSKRHKIIMGIADGLLYLHEICQRRIIHRDIKGENILLTENFEPQICDFGLAKWLPELCTHRNVSKFEGTMGYLAPEYFMHGIVSEKTDIYSFGVLLLEIITGRHALDHLKQSIVLWAKPLFEANNIKDLVDPSLGDDYDREQMDRVVLTASLCVEQYPILRPSMSQVAILLRGDDFVLEHRSH* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2050 419 PANTHER OS08G0249100 PROTEIN 48 416 - -
Gso3g2050 419 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 48 416 - -
Gso3g2050 419 SUPERFAMILY Protein kinase-like (PK-like) 118 406 IPR011009 -
Gso3g2050 419 Pfam Protein tyrosine and serine/threonine kinase 144 350 IPR001245 GO:0004672|GO:0006468
Gso3g2050 419 ProSiteProfiles Protein kinase domain profile. 141 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2050 419 SMART serkin_6 141 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2050 419 Gene3D Transferase(Phosphotransferase) domain 1 218 412 - -
Gso3g2050 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Gso3g2050 419 ProSitePatterns Protein kinases ATP-binding region signature. 147 169 IPR017441 GO:0005524
Gso3g2050 419 Gene3D Phosphorylase Kinase; domain 1 101 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2050 Gso-Chr3 45909987 45915429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2050 126 413 Receptor kinase-like Gene Family AT1G53420 44.932 7.07e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso3g2050 PK_Tyr_Ser-Thr 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2050 - - gmx:113001177 857.055