Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2038 ATGCAACTTGGCATTTTTCGGGGCACCCACATAAAAATATTTTGCATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTGTATCCCCAACCACAGGACCCGTTTGGCCATGGAATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAATTGGGGCTATGCAGATTTCAACCTTGAAAAAGAAGACCGAACTTGTGTCCCTTTTCTTGCGAACCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCAATTGAATATTGCATCAAATCCTCAATCTTCAGAAACCAGCAACACACAGAACAACTTAGATAGTTCAGTTTCCACCCCTGCTCGTCCCAAAAGGCGCAGGACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGTGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAAGCGAAATCTGATGTCCTCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCAGTGGTGGCTGTGACAATTCTACAGCCATGAGTGAGCAAAAGAGTGAGGCTCAGTCGGGCATTGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATTGTCTCCAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACAACAGGGGAAATTGTCCTCTATTCTCTTAGCGTTAAGGTGGAAGAAGATTGCAAGCTAGGATCAGTGGATGAAATAGCTGCAGCGGTGTACCAAATTCTGGATAGGATTCAACAAGAGACAATCTCGAATTAA 1032 0.4409 MQLGIFRGTHIKIFCMCLPEGERGMALEAVVYPQPQDPFGHGIKDPSYNYNNLLEGGGGNWGYADFNLEKEDRTCVPFLANQTENYPYGEWNCSPSPPSMLPQLNIASNPQSSETSNTQNNLDSSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEAKSDVLFSEFFSFPQYSTSASGGCDNSTAMSEQKSEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQILDRIQQETISN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2038 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 212 IPR036638 GO:0046983
Gso3g2038 343 Coils Coil 196 216 - -
Gso3g2038 343 MobiDBLite consensus disorder prediction 99 128 - -
Gso3g2038 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 199 IPR011598 GO:0046983
Gso3g2038 343 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 25 342 - -
Gso3g2038 343 Pfam Helix-loop-helix DNA-binding domain 149 200 IPR011598 GO:0046983
Gso3g2038 343 SMART finulus 154 205 IPR011598 GO:0046983
Gso3g2038 343 PANTHER MAX DIMERIZATION, MAD 25 342 - -
Gso3g2038 343 MobiDBLite consensus disorder prediction 99 147 - -
Gso3g2038 343 CDD bHLH_AtFAMA_like 151 222 - -
Gso3g2038 343 Gene3D - 133 215 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2038 Gso-Chr3 45802751 45804933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2038 25 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.678 1.26e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g2038 HLH 8.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2038 - - gmx:100777413 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1997 19 48582352 48584480 Gso3g2038 3 45802751 45804933 GST
Gso3g2038 3 45802751 45804933 Gso10g1428 10 40689975 40691494 PCT
Gso10g1428 10 40689975 40691494 Gso3g2038 3 45802751 45804933 PCT