Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2037 ATGAAGACAGTCCTATTCCTCCTTCTGGTGTCAGCGTTAATCCCCATCGCCGTCGCGCAGCCCAATGACTTCTCCGACGCAAACCTCAACGAGTTCAACTCCTCCGTAGCCATAATCATAATCATATTAGTAGTCGCGTTTTTCCTCATGGCCTTTTTCTCCATCTACGTGCGCCACTGCGCTGATTCCCCTTCCAACACCGTCAGGCCTCTCACCACCGCACGCTCCAGGAGGGCCGCGCGTGGCCTTGACCCCGCTCTGATTCAAACATTCCCTATCCTCGAATACTCCGTTGTTAAGATCCACAAAATCGGAAAAGAAGCTTTGGAATGCGCTGTGTGTTTGTGCGAGTTCGAGGACACCGAAACGCTGCGTTTGCTCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATCGACGAGTGGTTGAGCTCCCACACCACGTGCCCCGTGTGCCGCGCCAACCTCCTTCCCACCGAGTCCGAGGATGCTATTGCTAACGCCAACGCCAACGGTGTTGTTCCAGTTCCGGAAACGTTAACGCGAGACATCGAATCCCAAAACGACGCCGTGCAAGCCGCGCCAGAGCAGCAGAACGCGGAGGCTGACCCAGTTTTACCCGAACCGGAAGTTGTTTCCCTGGACAAAACGCTAAACCGGAACCGCACGCGAGGGTCGCGGTCGAACCGGCCGCGGAGGTTTCCCAGGTCACACTCGACTGGGCACTCGCTGGTCCAACCGGGAGAAAACACTGACCGGTTCACTTTAAAGTTGCCTTTGGAGGTGAGGAAGCAATTAATAAACCGCCAATTACAACGTGCGAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGACAGGGTTACCGAACCGGGGGAGAAGGGAGTAGTAGAGGCAAAATCTCGAGGCGGTTGGACCGGAGTTTGAAATCGGACCGGTGGATTTTCTCAATGACTGCGCCCTTTTTTGCAAGGGCGTTGTCTATTAGATCGCCTAGGGTTCGAAACAACGATGTTGAAGGAGCGGCGTCCCCGTCGTCTCCCACCACGCCTATCATGCCGCCGACGGCCGTTGACTCGGCAAGGCCTCCGGTTTAA 1101 0.5577 MKTVLFLLLVSALIPIAVAQPNDFSDANLNEFNSSVAIIIIILVVAFFLMAFFSIYVRHCADSPSNTVRPLTTARSRRAARGLDPALIQTFPILEYSVVKIHKIGKEALECAVCLCEFEDTETLRLLPKCDHVFHPECIDEWLSSHTTCPVCRANLLPTESEDAIANANANGVVPVPETLTRDIESQNDAVQAAPEQQNAEADPVLPEPEVVSLDKTLNRNRTRGSRSNRPRRFPRSHSTGHSLVQPGENTDRFTLKLPLEVRKQLINRQLQRASSLIVLPREGSSRQGYRTGGEGSSRGKISRRLDRSLKSDRWIFSMTAPFFARALSIRSPRVRNNDVEGAASPSSPTTPIMPPTAVDSARPPV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2037 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 305 - -
Gso3g2037 366 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Gso3g2037 366 PANTHER RING FINGER DOMAIN-CONTAINING 2 305 - -
Gso3g2037 366 CDD RING-H2_EL5_like 110 153 - -
Gso3g2037 366 MobiDBLite consensus disorder prediction 223 237 - -
Gso3g2037 366 MobiDBLite consensus disorder prediction 187 250 - -
Gso3g2037 366 MobiDBLite consensus disorder prediction 349 366 - -
Gso3g2037 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 158 IPR013083 -
Gso3g2037 366 Pfam Ring finger domain 110 153 IPR001841 -
Gso3g2037 366 SMART ring_2 111 152 IPR001841 -
Gso3g2037 366 SUPERFAMILY RING/U-box 103 159 - -
Gso3g2037 366 MobiDBLite consensus disorder prediction 334 366 - -
Gso3g2037 366 MobiDBLite consensus disorder prediction 284 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2037 Gso-Chr3 45771473 45772931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2037 4 348 Rapid Response to Elicitors AT3G05200 44.068 8.49e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2037 K10664 - gmx:100783823 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1996 19 48562010 48563494 Gso3g2037 3 45771473 45772931 GST
Gso3g2037 3 45771473 45772931 Gso10g1427 10 40653872 40655227 PCT
Gso10g1427 10 40653872 40655227 Gso3g2037 3 45771473 45772931 PCT