Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2032 ATGGATCATCAAGGGCATAGCCAGAACCCATCTATGGGGGTTGTTGGTAGTGGAGCTCAATTAGCATATGGTTCTAACCCATATCAGCCAGGCCAAATAACTGGGCCACCGGGGTCTGTTGTGACATCAGTTGGGACCATTCAATCCACCGGTCAACCTGCTGGAGCTCAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCACCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAGCCAGTACCAAGAAATTGAGAAGGTTACTGATTTTAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGGATGATATCAGCTGAAGCACCAGTCATTTTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGCTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAGAAAAATGATATTGCTGCTGCTATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCCCTTCCATACTGCTACATGCCGCCTCAGCATCCGTCCCAAGTTGGAGCTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCTTACATGGCACCACAAATGTGGCCACAGCCACCAGACCAACGACAGTCATCTCCAGAACATTAG 783 0.4738 MDHQGHSQNPSMGVVGSGAQLAYGSNPYQPGQITGPPGSVVTSVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSSQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHPSQVGAAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPEH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2032 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Gso3g2032 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Gso3g2032 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Gso3g2032 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
Gso3g2032 260 SUPERFAMILY Histone-fold 72 173 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2032 Gso-Chr3 45740673 45743402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2032 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.484 3.02e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso3g2032 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2032 K08066 - gmx:100527803 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1992 19 48523443 48526403 Gso3g2032 3 45740673 45743402 GST
Gso3g2032 3 45740673 45743402 Gso10g1420 10 40609773 40611481 PCT
Gso10g1420 10 40609773 40611481 Gso3g2032 3 45740673 45743402 PCT