Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2020 ATGCAAGACATTTTCGGATCAGTTCGTCGATCACTGGTATTCCGCGGTTCGCCGGAGAACGAAGAAGCCTCCTCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTATTGTATCCGAAGTTCCAGAGTCTTCTCCAAACCCTCGCCGCCGTCGCCTCCGCCGCCGTCCTTTCCTAAGAACGCTGCTCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGCGCCTTTGGCCAAGTCTATGTTGGAATGAATCTCGATTCCGGAGAGCTTCTTGCGGTTAAACAGGTCTTGATTGCGGCAAGTAATGCTACGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTTGAGGAAGAAGTTAAATTACTGAAAGACCTTTCACATCCCAACATTGTTCGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCTGTAATAAGAACCTACACAAAGCAGCTACTACTTGGACTCGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGACTTTGGGGCATCCAAACAAGTCGTTGAGCTGGCAACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCGCCAATTCCTGATCATCTCTCAGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCAATTTTGAGGTCATCGGCATCAGAACTGCTGCAGCATCCCTTTGTTACTGGTGAACATATGAATTCTCTTCCTCTGTCATCTAATGTCACGGAAAACTTTGAAGCTTCTTCACCATCATGTGCCCCAAATGATGATGAATCCTTCCTTTTCCGTTCAACTGTAAATCCTCTGGACTCGGGAAATAAACAGTCGTGGGGAATGAGCAATGATGATGATATGTGTGTGATTGATGACAAAGAAGATTTCTCGCAGAGTGATGCCAAATACAAATCATTTATGTCAACTAATAATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTACAAATTTGATGCAAGTCCAGAACTGGAAAATAGAGGGGTTAGTTTTGGCACTGATGTAAGTTACATGCCACCTGATCAGTCAGGGGATGATGATAAGGGGCAGAAAGATTTCTCCTTTCCAGGTGTGCCATCTCTGTCAGAGGAAGACGATGAACTCACAGAGTCAAAAATTAAAGCTTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAATTGCAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTGATTGAGAGCACTAGTGAGGATACTGCTTGTCGAAAATATTTGAAATTACCTCCTAAAAGCAGGTCACCAAGTTGGGTACCAATTAGCACTCCATCTAAAGCCGTTGATAATTCTGAAAGTCCTGGAAGTAATGGCCGGTCATCATCAACTGTTGGCCATGTAAATAACCATAGTCCACAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGACTGACAGTTGACTCTCAGCAGCAGCCCAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGGCAAGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTTTAAATCGACAGAGGGAGAGGACAAGATTTGCTTCTCCCAGCAAATAG 1989 0.4515 MQDIFGSVRRSLVFRGSPENEEASSLGVGGSLVDKISYCIRSSRVFSKPSPPSPPPPSFPKNAAPPIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASNATKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPILRSSASELLQHPFVTGEHMNSLPLSSNVTENFEASSPSCAPNDDESFLFRSTVNPLDSGNKQSWGMSNDDDMCVIDDKEDFSQSDAKYKSFMSTNNIESFNPMSDPSDDWGYKFDASPELENRGVSFGTDVSYMPPDQSGDDDKGQKDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVIESTSEDTACRKYLKLPPKSRSPSWVPISTPSKAVDNSESPGSNGRSSSTVGHVNNHSPQDIPASPLNEWKGLTVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALNRQRERTRFASPSK* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2020 662 Gene3D Transferase(Phosphotransferase) domain 1 68 365 - -
Gso3g2020 662 MobiDBLite consensus disorder prediction 536 662 - -
Gso3g2020 662 Coils Coil 102 129 - -
Gso3g2020 662 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 617 - -
Gso3g2020 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Gso3g2020 662 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gso3g2020 662 MobiDBLite consensus disorder prediction 544 584 - -
Gso3g2020 662 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 617 - -
Gso3g2020 662 MobiDBLite consensus disorder prediction 611 633 - -
Gso3g2020 662 MobiDBLite consensus disorder prediction 645 662 - -
Gso3g2020 662 Pfam Protein kinase domain 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2020 662 SMART serkin_6 69 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g2020 662 MobiDBLite consensus disorder prediction 443 480 - -
Gso3g2020 662 SUPERFAMILY Protein kinase-like (PK-like) 68 333 IPR011009 -
Gso3g2020 662 CDD STKc_MAPKKK 68 332 - -
Gso3g2020 662 Coils Coil 613 633 - -
Gso3g2020 662 MobiDBLite consensus disorder prediction 592 610 - -
Gso3g2020 662 ProSiteProfiles Protein kinase domain profile. 69 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2020 Gso-Chr3 45658408 45664247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2020 1 662 MAP Kinase Kinase Kinase AT1G54960 57.654 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso3g2020 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2020 K20606 - gmx:100779001 1265.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1982 19 48463628 48469272 Gso3g2020 3 45658408 45664247 GST