Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2017 ATGTCAGATTCACAGTCCAATTCAGAGATTTTTAGCATTCGGATTGTCACCATCGACTATTACATGGCACCGCCCATCCCCGACGCTGATATCTGTTATAGCAGCTTCCACGGTGGAAAGGTGAATGAAGTGCCTGTGATAAGAGTGTATGGTCCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATTCATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCAGATATACCACTTCAACTGGACTCAGGTGATGCATTCACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAATGCTGGTTCAAGTAGACAACATGTACATGGATGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCATTCACTTGAGGAGTTATTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTTATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAAGTTCCGCTACCCCATTCCTGACACTTGCAAGAAATTAAATACCGATGATCAGCATAGAAAGGCAGATTCAGATGCTCATGCATGTTTAGAGTCAAAATTGTGGATGTCTTCCACGATCTCATCTGAGTGGATGTGGTCACCCCCAAGCAAATCCGGTGCTTTGTCAAATGATGAGGCTCACTGTCCTAAACGTCAAAGTATCTGTGAGCTTGAAGGAGATACTTCTGTGGATGAGATACTTAATCAGCAATTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAGCAACAGAAACGGAATGGGGTTCATGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTACCAGAAGATGTTATGAAACTTCTCTCTGTTGGTCTTGACTTTGAGAAAAAATTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTATTTTGTACTTTTTCTGCGAAGGAATTGAGAGAAACAGACATAATAGGCTCGGCATCACCACCAGCTTCATTATGCAAAAATGCCAAATTGCATGAGGAAGGGACTGATGCAAATCTTGAAATGTTGACTATGGATGAAATCCCTTCATCTGAAATGATTGGAACATTGGACATAAAGGCTGCTGATAAGGAAGCACAAAATATTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGACGATGAACTTGTTTATGAAACAATCTTGACTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAGGAAGCTAATATTGCTTATGAGAATGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGAGTTACCAAATGAAAAACCCTCTCATTCCTTGGATCACTATTGTCCTATTGGAGCTTCATCAAGCAGTATGTTACCTCAAGTTGATGGTTCTAATGATGATGAGTTCTCAAGTCCACGTGATAGTTTGGCTGGAACCTCTTCTCTAGTAGAGATAAACAGTGAATACACAAGGGCTTCTGAGCACCATGTACTGCCCAATACTGACACAAGTACACTTATTAAAGATAAAAGGAATAAACAATGGGGGTCTTTGCCTTTTTCCTCAATTGATAAAGCTAATAATGATGGAGAGCATGCTACTTTACTTGTGACTCATCCATTTGAAAGTGAGACTGGAGATTCTGCTCACTCAAATTACTTAAACAGAAATGAGGTTAGAAATGGTGCTTGTTTTATAAGGAACAAGGGCAGAGATGCTTCAGATTCCAAAGAAGTACACAAATTGGTTAACTGCTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGCTGACTGTGAGTCTGGAACTACTAAAAAGCTTCTTTTAGACAGGCATGAGGAACAAAATGCATGCCTTTGGCAAAAACAGCTGGATTTAAAAACAATGCAAACTGATGAAGAAGAAATGGAACACCAGAAGAATTGTGAATGTGAAGTTAGCAATCATGCTAATTTAGTGCATGGGAAAATGCCCCTTCCAGCTGGCAGTGACTGTCTTTTACAAGCTACTAGCCGGCCAAAAGATGAATATTTTGGTCAACATGAAATAGAAGGTTTGGAAGCAAGTTCAGTGTTGAGGAACTGTACAAATGGAGAGTCTGCTTTAATGCATGGGGGACCAGGCCTCCAAAAGCCTGAAAAATTATACTTAATCAATTCCATAGACCCATCTATGGTTTGTAGGGGTGAAAACCTTAAGGTTGGCACAACTTTTACAAAACCTGTAGCTTCTGATGCCTGTACCCAAAATCCCCTCTTGGACACACGGTCGAGAACAGCTTCTGTTCATACAGTCAGAGCTTCTGAGAGGACTCCACAAACTGATACTTCTGCTTCAAGTAGTGTGCAGAGCTCCTTCATTGATGATAAAGTGTCTGACAAATTCATGGATCAAAGTTCTCATGGAAGCAGATCTTTTGTGCAACATGATCAGATGACGTTTTGTGAGAATTCTGTGGAGAAAAATGCTGCAAGTGATGTGCAAGTATTGTTAAGTGAAAAAGTGGATACTCAAAAGCTGGGTGAAAATTTGTTGCATGAGACTATTAAATTAACTGAAATAACCACAGGCAAGAACCCCCTGGCTGATAAGACTCTTGAAGGTACTTTGACCTTGCCAACAACCTCTAATACCCATTTTCATTTGGATGAGGACAGCTCTGATGAAATGCCAGGGGATGTTCTGGATGACTTTCTTCCGATATCTGCAAGGGATTCTCAGAAAGGGATGGAGACTTGCAATGAGTATGTTACAGTTAAAACCCTTACATCTAATGGTACAAAGAGTGTCTCGACCCACTATCAAAATGATGGTTCTCACCTATACCTATTAACTCCTAATATTTTGCCTCCTTCTGTGGGTACTGTGCATAGATGGTTACTTTGTAACAAGAGAGGGAACATTCCTGATCATACACATCAAGAAACAGATGCAGAGGACAAGGATGTTCCAAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAAGCTGTATCAAGATTCTGATACAGAAAATAAGCCTCCATGCAATGGAGAAGGACAAACAGAAAGAGTGAAAGCATGCCTAGATGACTCACAAGATATTTCTCAGATATCAGACCCTGATAGAAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGATTCTTGCAGAATGTAGAGGAGACCTTTTACCCGATCCTCAATTTGATGCCATCAACATTGTAGCTCTTGGTTTTCAGAATGACGGTGATTCTATTGTTGAAGTTCTAGTTCTTTTACATAGTAAATATGTACCTTGTCAGAGAAGTTTTGATGGTCTATTTGGCTGTAAAATATTGGTCTTCACTGATGAGAAACTCTTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTGGCAGAAAGGGCATCACATCTTGGTTTGGGATTACTTAATAATGTGTCTCGCACTCCATCTGAGTCTTTGATTGCTTCTGAAGATAGCAAAACTTATGAAAAAGATATCTTGGAACTGGACATCCATGATACCCCTAGTCGAGATTGTTGCGTGCCAGAAAATTCAATAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATATAGGAGGCAGAATTGTCCTGAATGCATGGCGATTGATCCGTGGAGAAGTTAAGCTGAACTTATATTCAGTTGAAGCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTCATTTCATCACAAGGTGCTAACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTTGAGATAATAAACCAGCTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTTTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACGCAAAACTATCTTGCCATCTCACCTGGAAAACAACAGGTTGCTTCTCAGCCTGCCATGGAGTGCCTTCCCCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTTTGCACTTGTCTCGGTAAAGTTGTGGCATCAAAGGCCAACACACTTGGGGTTAGTTCATTCTCACCAGAGCAACATGTTCTGCAGGATTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCGAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTAACAACAAGAATTATGGTAAAACAAGCAATAAAAAAGTTGGCTCCTCCAGAGAAAGTTCTTCAGCGGATATTTAATGCAAGGCAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATCGTTCAGTGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGATGCACTGTCAAAGAGTCTTTCCAAATTGGGAGTGAGATTGCCTCTGCTATCACTGCTATGAATCCTAGCCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTCCTTACTAAGAAAAGATATGTCGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCCAAGGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTCTTTGAGCATCAGAATTTATTGGAGGTGAAGACTTATTTGCATCGTCAGTGGAAGAGGATTCTTTCAGGAAGAATCTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATCTCATCACTTCCTCCTGCTGCAATTGTAGCCACTAAGGCAATGACGGTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCGTATGTTGTAATTCATGGAGAGCCTGGAGCTCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTACATTAATAAACAAATAGTACCAGCTTTACAGCGGGTATTTGGACTTGTTGGTGCTGACTTAAACCATTGGTTTTCAGAGATGCCCCGCCCCACAAGGGAAGCTTCTGCAAAGCATACATTAACTACAAATTTCCATCAAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGATAGGTTGGTTCAGGCATCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAGACTTCAAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTGTATGTCACCATTGTGGAGGCGGGGATAGGCTTCTGGAAAATGGTGTGAAGTGTACGTCCATTTCATGCTTGGTGTTTTATGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATGTTGCTGCAGATAAAGACTTATATCCGAGATGCACAGTGGAATGGTTCTGA 5931 0.4092 MSDSQSNSEIFSIRIVTIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGPTPAGQKTCLHIHRALPYLYVPCSDIPLQLDSGDAFTYKVAASLEKALKLKGNAGSSRQHVHGCSLVRARKFYGYHSLEELFVKIYLYYPQDVSRAANLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRYPIPDTCKKLNTDDQHRKADSDAHACLESKLWMSSTISSEWMWSPPSKSGALSNDEAHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRNGVHEATMPSDPGKPLPEDVMKLLSVGLDFEKKFIELCSEAETSLFCTFSAKELRETDIIGSASPPASLCKNAKLHEEGTDANLEMLTMDEIPSSEMIGTLDIKAADKEAQNILKWLATSQAAEDINSDDELVYETILTPLLPAATIDKVLEEANIAYENESQKECQDILDSIDDMLELELPNEKPSHSLDHYCPIGASSSSMLPQVDGSNDDEFSSPRDSLAGTSSLVEINSEYTRASEHHVLPNTDTSTLIKDKRNKQWGSLPFSSIDKANNDGEHATLLVTHPFESETGDSAHSNYLNRNEVRNGACFIRNKGRDASDSKEVHKLVNCSLRDLMRRKRSYRVEQADCESGTTKKLLLDRHEEQNACLWQKQLDLKTMQTDEEEMEHQKNCECEVSNHANLVHGKMPLPAGSDCLLQATSRPKDEYFGQHEIEGLEASSVLRNCTNGESALMHGGPGLQKPEKLYLINSIDPSMVCRGENLKVGTTFTKPVASDACTQNPLLDTRSRTASVHTVRASERTPQTDTSASSSVQSSFIDDKVSDKFMDQSSHGSRSFVQHDQMTFCENSVEKNAASDVQVLLSEKVDTQKLGENLLHETIKLTEITTGKNPLADKTLEGTLTLPTTSNTHFHLDEDSSDEMPGDVLDDFLPISARDSQKGMETCNEYVTVKTLTSNGTKSVSTHYQNDGSHLYLLTPNILPPSVGTVHRWLLCNKRGNIPDHTHQETDAEDKDVPKCASETEPPLRPKLYQDSDTENKPPCNGEGQTERVKACLDDSQDISQISDPDRKSSFTPLSQIGFRDPASVGCGQQLTLLSIEILAECRGDLLPDPQFDAINIVALGFQNDGDSIVEVLVLLHSKYVPCQRSFDGLFGCKILVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNVSRTPSESLIASEDSKTYEKDILELDIHDTPSRDCCVPENSIIEDEWGRTHASGVHIGGRIVLNAWRLIRGEVKLNLYSVEAVAESVLRRKIPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEIINQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPSKVRRGILPRLLEEILTTRIMVKQAIKKLAPPEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLRGCTVKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQNLLEVKTYLHRQWKRILSGRICLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMTVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIVPALQRVFGLVGADLNHWFSEMPRPTREASAKHTLTTNFHQTRIDYYYLSKHCVLCDRLVQASARLCNQCSENEVAAATAVISKTSKLEQEMQHLVAVCHHCGGGDRLLENGVKCTSISCLVFYERRKVQKELLAATHVAADKDLYPRCTVEWF* 1977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2017 1976 Gene3D - 1152 1425 IPR036397 GO:0003676
Gso3g2017 1976 PRINTS DNA-directed DNA-polymerase family B signature 1442 1455 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso3g2017 1976 PRINTS DNA-directed DNA-polymerase family B signature 1551 1563 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso3g2017 1976 PRINTS DNA-directed DNA-polymerase family B signature 1607 1615 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso3g2017 1976 MobiDBLite consensus disorder prediction 1082 1101 - -
Gso3g2017 1976 MobiDBLite consensus disorder prediction 1024 1044 - -
Gso3g2017 1976 ProSitePatterns DNA polymerase family B signature. 1609 1617 IPR017964 GO:0000166|GO:0003676
Gso3g2017 1976 Gene3D DNA Polymerase, chain B, domain 1 30 196 - -
Gso3g2017 1976 CDD DNA_polB_zeta_exo 1114 1364 - -
Gso3g2017 1976 Pfam DNA polymerase family B 1383 1830 IPR006134 GO:0000166|GO:0003677
Gso3g2017 1976 SUPERFAMILY Ribonuclease H-like 36 1389 IPR012337 -
Gso3g2017 1976 SMART polmehr3 1115 1621 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso3g2017 1976 SUPERFAMILY DNA/RNA polymerases 1429 1843 IPR043502 -
Gso3g2017 1976 Gene3D - 1684 1851 IPR042087 -
Gso3g2017 1976 Gene3D Helix hairpin bin 1508 1568 - -
Gso3g2017 1976 MobiDBLite consensus disorder prediction 506 528 - -
Gso3g2017 1976 MobiDBLite consensus disorder prediction 806 839 - -
Gso3g2017 1976 Pfam DNA polymerase family B, exonuclease domain 1115 1248 IPR006133 -
Gso3g2017 1976 Pfam DNA polymerase family B, exonuclease domain 55 195 IPR006133 -
Gso3g2017 1976 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1968 IPR030559 GO:0006281|GO:0016035|GO:0019985
Gso3g2017 1976 CDD POLBc_zeta 1390 1838 - -
Gso3g2017 1976 Gene3D Palm domain of DNA polymerase 1428 1673 IPR023211 -
Gso3g2017 1976 MobiDBLite consensus disorder prediction 1023 1073 - -
Gso3g2017 1976 Pfam C4-type zinc-finger of DNA polymerase delta 1875 1948 IPR025687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2017 Gso-Chr3 45622242 45637306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2017 1119 1958 Core DNA Replication Machinery Family AT5G63960 28.950 1.03e-87 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2017 K02350 - gmx:100777934 3961.38