Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2015 ATGGCACCAACGAAGAAACCTAGAACTATGAAGAATAAGCGGTTTTCAAGTGAAGTCTCTACCAAGAAAGATGAAGTCGGCTCAAGTAAAAATAAGCAACGGAAGAAAAATATGTCTGATGAATTAGGACCTAAATGGAAAGCCGGAGAACTAAACCAGTTTTATGAAGCGTACAGGAAGCACGGGAAAGACTGGACCAAGGTGGCTGAAATTGTATCTAGTAGATCTGCTAAAATGGTGGAGGCCCTTTACAATATCAGTAAGGCATACCTATCTCTGCCAAAGGAGTCAGCTTCTGCTGTTGGCCTAATTGCAATGATCACAGATCACTATAGTATGGTGGAAGAGAGTGATAGTGAAAGGGAGAGAAATGATGTACCAGGATCTCGACAACCTATGAAACGAAAGTGTGGAAAAATTCAGCTTAGTATATCCAATGATTCTGTCCAATCTCAGTCAATTGCTTCCAAGGATGGTTGCCTTTCTCTATTAAAGAAAAGACAATTTGATGGTATCCCACCTTGGCCAGTTGCGAAAAGGACGCCTCGTTTCCCAGTTAACGACTCTAAGCCTGATGATAGGGAAAATTATGTTTTGCCTAATAAGAGAAACCCAAAGTCAATGTTTGATGCTAATGATGACGAAGCTGCACATGTTGTGACTATGGCATCAACTGAGGCTGCACAAAGAGGTGTCTCTCCCCGTGTATCTCAAAATCCATACAAAAAATCAAAGCAGGAGTTCTCTCTGGTTCAGAGTGGGCAAATAATGGTATTTAACAGCCGTCCTGCATGTTATGCCATTAGCTGGATTCTGTTGGCTGTATTATTGCTTCAAAAGATGAATTTCGATTTTGGTTTTGTGAATAAACATCAACATTCAAATACAAGCTTGTGGCAACTGGCAAGCTTTCTAGTTGACTTTCTTGTGTTCATACCATGTTTTATCAAATGTTTTCAATATTTGAATCACCAAGAGTCTGAGACAGTTCCTGCCAAGTTTTATGATGCTTCTATTGATGAAGAGTACTTGAAAGATAAAAGCTCTTCCATGGATGCTTTGCTCACTTTGGCTGACATGTGTCTATTGGTATCAACATCTACAATGGAATCTGGTAAGAAAGGAGTTTTTGGTATAGGAGACATCCCATCTAATAACCCAGTCTACACGATATTGAGAGCATTTTTTGGAATCAAATATTTGCGTATTTTCATGTTCAACTTAAATTCCATGAATTTCTTGATGAAAATCTACTTCTTGTTGTTAGTTGCTACTCCTGTTCATGTTTTTTGTTTTAGTCATCCTGGGGGAGTTTACATATTTTCTTCTGTTCAAATTCTTTTATTTCATTACTGTGTTCTCATCCTTTTCCTCTCCCATCTAGAATCATCTGTCCAGTTAAAGGAAGAAAAAATGGCTCACAAAAAAGATGAGAAGTCTGTTTTACCTGAAGGAAAATCAACAAGGCAAAACAGAGATAAAATTAAACTTCAGGGTTTGAAACAGAAGGTTGATCATGCAGTCCCTGGAGTTGGTTCATCAACTAAACATAGAAGTAGACGTAAGACGATTTTACAGAGACCATTCACACCTAAAGAGAAATCTTCTGAGAAAATATTGAAAAGTAAACAGAATAAGAATTTGACCCCGGTCCACGGTGGGGCATTAAACATTTTAGTTGGTACGTATCAGGAAAAGCTTTCTGGTTGTTTGTCATCTTATATGGTTCGTCGATGGTGTATGTTTGAATGGTTTTATAGCGCAATTGATTATCCATGGTTTTCCAAAAGGGAGTTCATGGAATACTTAAATCATGTTGATCTAGGGAGAATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATTAGAAGTTCCCTTGGCAAACCTCGCAGGTTTTCAGAACGCTTTCTTCACGGAGAAAGACAAAAACTTGAACAGTATCGTGAATCTGTTCGGAAATATTACGATGAACTGCGGACTGGTATCAGGGATGGACTTCCAACAGATTTGTCTAAGCCGTTATGTGTTGGACAACGAGTAATTGCTTTCCACTCGAAAAAAACAAGAGAGATTCATGATGGCAGTGTGCTTACAGTTGACCATGACAATTACAGAGTTCAGTTTGACCGTCCTGAATTGGGTGTTGATTCTGTCATGGACATTGATTGCATGCCTTTGAATCCATTGGATACTATGCCAGAAACTCTGAGGCAGCAGATTAGTGCTAGTAATGTTCCTCGCATAAGTAAAAAACCACACAAGAAAGGAAATTCACGCTTTGGGGGGAACATGACATATAATTCAAGTGGACCTGTGGAGAAGGCACCCACCTCTTCAAGTACTTTAGCATTAGCTAAGCCCAAAAAGGCACTGTCACCGGGGAAATTGTTATTGGAACTTAAAAATGCAAATAGTGAGATAGTGGGAAACCAAAATGATGCAGACTGCTTTAATGATCGGAGGCTTTCAAGAAGCATTACGCCACATGTTATACAGCTTAAGGAAGCCAGTGGACAGGTTTTTAATGCTCTGTGTTATTCGAGGAAACATAATACAGAGCACATCAGAAACTCTCCGCCACCACAGATGAATCCCAAAGCAAGTTTTGACAATCATGACAGCCTTCCCAATACAATGGATGGTTCTCTGGTGCAAGAGTTAGGGTCAGCTGTTGAAATTATTAAAGGATCCAAACTTAGAGCACATGCTATGGTGGATGCTGCATTTCAGGCATTGTCTTCGACGAAGGAAGGTGAAGATGCTTTGACGAGGATTGAACAGGCATTGGATTGTGCGGATAATCAGCAGCTGGCAACCAACTCAAGGTTACCTGTGATTAGGTCCCAAGGGCAAATTAGTGGAAGTTTTGATTACCATAATCGGTCAATTTCTCATCCATCGAAGCCTCTACTCAATAATGCATCTGGTAGAAAACTGCATAATGATTCTGACAAAGTTAATACTCAAATTCTCCTGGACCTCATCACTTCCTGTGTCGCCACAGGGATCACGATACAGACTTGTGCCAACCAACAATGTCCTCCAGCTGATGTGACTCCAATATTTGATACTGCTGTTACCATCCTGCATCCACGCAGTCTACGAAATTTTCATGTTTACAGAGATATTCAAATGCACATGCAAAGAATTAAGAGCCAGATTTTAGCCCATATCAATAATTGA 3183 0.399 MAPTKKPRTMKNKRFSSEVSTKKDEVGSSKNKQRKKNMSDELGPKWKAGELNQFYEAYRKHGKDWTKVAEIVSSRSAKMVEALYNISKAYLSLPKESASAVGLIAMITDHYSMVEESDSERERNDVPGSRQPMKRKCGKIQLSISNDSVQSQSIASKDGCLSLLKKRQFDGIPPWPVAKRTPRFPVNDSKPDDRENYVLPNKRNPKSMFDANDDEAAHVVTMASTEAAQRGVSPRVSQNPYKKSKQEFSLVQSGQIMVFNSRPACYAISWILLAVLLLQKMNFDFGFVNKHQHSNTSLWQLASFLVDFLVFIPCFIKCFQYLNHQESETVPAKFYDASIDEEYLKDKSSSMDALLTLADMCLLVSTSTMESGKKGVFGIGDIPSNNPVYTILRAFFGIKYLRIFMFNLNSMNFLMKIYFLLLVATPVHVFCFSHPGGVYIFSSVQILLFHYCVLILFLSHLESSVQLKEEKMAHKKDEKSVLPEGKSTRQNRDKIKLQGLKQKVDHAVPGVGSSTKHRSRRKTILQRPFTPKEKSSEKILKSKQNKNLTPVHGGALNILVGTYQEKLSGCLSSYMVRRWCMFEWFYSAIDYPWFSKREFMEYLNHVDLGRIPRLTRVEWSVIRSSLGKPRRFSERFLHGERQKLEQYRESVRKYYDELRTGIRDGLPTDLSKPLCVGQRVIAFHSKKTREIHDGSVLTVDHDNYRVQFDRPELGVDSVMDIDCMPLNPLDTMPETLRQQISASNVPRISKKPHKKGNSRFGGNMTYNSSGPVEKAPTSSSTLALAKPKKALSPGKLLLELKNANSEIVGNQNDADCFNDRRLSRSITPHVIQLKEASGQVFNALCYSRKHNTEHIRNSPPPQMNPKASFDNHDSLPNTMDGSLVQELGSAVEIIKGSKLRAHAMVDAAFQALSSTKEGEDALTRIEQALDCADNQQLATNSRLPVIRSQGQISGSFDYHNRSISHPSKPLLNNASGRKLHNDSDKVNTQILLDLITSCVATGITIQTCANQQCPPADVTPIFDTAVTILHPRSLRNFHVYRDIQMHMQRIKSQILAHINN* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2015 1060 Pfam Myb-like DNA-binding domain 45 80 IPR001005 -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 760 781 - -
Gso3g2015 1060 SMART sant 42 90 IPR001005 -
Gso3g2015 1060 Pfam DIRP 584 684 IPR033471 -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 748 781 - -
Gso3g2015 1060 Gene3D - 4 96 - -
Gso3g2015 1060 Coils Coil 637 657 - -
Gso3g2015 1060 Coils Coil 458 478 - -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 175 208 - -
Gso3g2015 1060 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 461 515 IPR028306 -
Gso3g2015 1060 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 511 1059 IPR028306 -
Gso3g2015 1060 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 259 IPR028306 -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 115 136 - -
Gso3g2015 1060 PANTHER LIN-9 461 515 IPR010561 GO:0006351|GO:0017053
Gso3g2015 1060 PANTHER LIN-9 511 1059 IPR010561 GO:0006351|GO:0017053
Gso3g2015 1060 PANTHER LIN-9 1 259 IPR010561 GO:0006351|GO:0017053
Gso3g2015 1060 MobiDBLite consensus disorder prediction 185 200 - -
Gso3g2015 1060 SMART DIRP_2 585 686 IPR033471 -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 509 536 - -
Gso3g2015 1060 SUPERFAMILY Homeodomain-like 43 90 IPR009057 -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 115 132 - -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 11 43 - -
Gso3g2015 1060 CDD SANT 45 80 IPR001005 -
Gso3g2015 1060 MobiDBLite consensus disorder prediction 1 44 - -
Gso3g2015 1060 ProSiteProfiles SANT domain profile. 41 76 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2015 Gso-Chr3 45604751 45614966 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso3g2015 DIRP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2015 - - gsj:114405333 2120.51