Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2012 ATGGAAGAAGATGATTATGTGGAGTATGTGCCCGTGGCCAAGCGTCGTGCCTTGGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAGGCCTCTGCTGTCACTGACGATGATTTGGAGAAACAAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAAGCGTCGCAGCTGAAACGAGAGCAACCTGAGATCAGTGTGACCGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGGAAAACCCTCATGTCTGTCCGCGAATTGGCCAAGGGGATTACTTATACGGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGCATGTGAGAAGGATGTCTAAGAAGGAGTGTGATTTGATTCGAAAGCAGTGGCATATAATTGTTGATGGCGGTGATATCCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCGGAGCCGGTTTTGAAGAAGTTGAAAGCTAAGGGGATTGTACAACCAACACCCATTCAGGTGCAAGGTCTGCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCATTCACGGGCTCAGGAAAAACTCTGGTCTTTGTGCTTCCGATGATCATGATGGCAATGCAAGAGGAAATCATGATGCCTATTGTTCCTGGAGAAGGTCCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCAAGGCAGACATATGAAGTGATTGAACAGTTCTTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTCAGGCCTTTGCTCTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGATATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAAGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCTACTATGCCTACCAAAATTCAGAACTTTGCCAGAAGCGCTTTGGTGAAACCTATTATTGTCAATGTGGGACGTGCAGGGGCTGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGTCTACAAAAAACCCCACCTCCTGTTCTGATATTTTGTGAGAATAAGGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCCATCCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTGCTGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTATGATATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGAAGGACTGGACGATGTGGAAAGACTGGTATAGCGACAACATTTATAAACAAGAATCAAAGTGAGACAACATTACTTGACTTGAAACACCTCTTGCAAGAAGCAAAGCAAAGGATTCCCCCAGTTTTGGCTGAGTTGAATGATCCAATGGAAGATAATGAAGAGATCACAGACATAAGTGGGGTCAAAGGATGTGCATATTGTGGTGGGCTTGGTCATCGTATCCGTGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCGATAGCAAATAATAGAAAGGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA 1764 0.4314 MEEDDYVEYVPVAKRRALEAQKILQRKGKASAVTDDDLEKQRVAETKPSLLVKASQLKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLHVRRMSKKECDLIRKQWHIIVDGGDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEQFLIPLKEAGYPELRPLLCIGGVDMRSQLDIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNEEITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2012 587 SMART ultradead3 161 372 IPR014001 -
Gso3g2012 587 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 567 - -
Gso3g2012 587 Coils Coil 64 84 - -
Gso3g2012 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 503 IPR027417 -
Gso3g2012 587 SMART helicmild6 407 488 IPR001650 -
Gso3g2012 587 Gene3D - 110 361 IPR027417 -
Gso3g2012 587 Pfam DEAD/DEAH box helicase 166 345 IPR011545 GO:0003676|GO:0005524
Gso3g2012 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 528 IPR001650 -
Gso3g2012 587 Pfam Zinc knuckle 545 561 IPR001878 GO:0003676|GO:0008270
Gso3g2012 587 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Gso3g2012 587 Pfam Helicase conserved C-terminal domain 381 488 IPR001650 -
Gso3g2012 587 CDD DEADc_DDX41 153 358 IPR044113 GO:0000398|GO:0003724|GO:0005524
Gso3g2012 587 SUPERFAMILY Retrovirus zinc finger-like domains 545 566 IPR036875 GO:0003676|GO:0008270
Gso3g2012 587 SMART c2hcfinal6 545 561 IPR001878 GO:0003676|GO:0008270
Gso3g2012 587 Gene3D - 367 529 IPR027417 -
Gso3g2012 587 ProSiteProfiles Zinc finger CCHC-type profile. 546 561 IPR001878 GO:0003676|GO:0008270
Gso3g2012 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 357 IPR014001 -
Gso3g2012 587 PANTHER BNAA06G38640D PROTEIN 8 567 - -
Gso3g2012 587 CDD SF2_C_DEAD 369 497 - -
Gso3g2012 587 Coils Coil 499 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2012 Gso-Chr3 45580537 45583282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2012 142 523 Eukaryotic Initiation Factors Gene Family AT3G13920 30.649 1.00e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2012 K13116 - gmx:100814127 1159.44