Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2011 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGATTCTCTACAGAGAATAATATTAATAGTGGAGAAGATGCAGCAGTAGCTGTTAAACAGCAATTGGAGATGCTTGGCCAGTTACATAGTCCAAATTCAAACACATCAACCACAACAAATAATAGCAATGGTAGTGCCTCAAACACAGATTCACAACCACCTGCTAAGAAGAAAAGAAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATAGCTCTATCACCAAACACCCTAGTGGCCACAAACAGGTTCGTATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAATTGCACCGACGAGGCCATAATCTACCGTGGAAGCTGAAACTGAGAACCACGACTGATGTTCGAAAACGGGTTTATGTTTGTCCAGAACCCTCATGTGTGCACCACAACCCAGCTCGTGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAGAAGTGCTCAAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCGAAAATATGTGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCTAGAAGAGATAGTTTCATCACCCACAGAGCTTTCTGCGATGCACTGAGTGAGGAGAACAACAAGTTCAACGAAGGACAATTGCCAAAGATGCATGGTTCAAACTTGCAACCACCAACAATAATCCCAAACCTAGTTGCATCATTACCAATCAATGGCGCCAATAATCACAAGCACCCACTATCACTCCCTCACGACCTCATGACAACAATTCCCGCAAAACCCTTTAACAACAACATGGCTGCAGCATTCACGAGAAGCCTTTCATCCACCTCTCAACTAAGCTCAAAATCACCAAACATTAACATGTTCGAGGAAAATGGTCTCCTTTCACCTCACATGTCCGCCACAGCATTGCTCCAAAAAGCTGCAGAAATGGGTGCAACAGTGAATAGTAACAGCAACAACAACAGCATGATGATGAGTGGAGAAAAAAGCTTTATTAATGTCACAAGCATGGCACCACCATCATATGGGATCATGAACCCCAACATGCACAACGGTCAACAAGACTTGTCTCAGTATAATTTCATTGCCAATGGGGTGGTGGATGGTGGTAGCAATGGCATGGGAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAATCGAAGCAGTACTTATAATGGTGTTTTGCATGCAATGAATAATGGTAGGTCAAGTGGTTCCATTGAAGTTGGTGGAACTAAAGAGAGTGAAGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGTGGTGGTGGTGGTGGTGATGGTAATTTCTATGGTGGTGATCAACAGTTAGAAATGGTTGGTGGAGATGGAATATGGGGAAATTGGTCAAATAAGAATGCAGGGCTTGAATCATTTTCAGCAACAAACAGCACCATATGA 1539 0.4263 MSNSNITSCDSWRFSTENNINSGEDAAVAVKQQLEMLGQLHSPNSNTSTTTNNSNGSASNTDSQPPAKKKRNLPGNPDPSAEVIALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTDVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSEENNKFNEGQLPKMHGSNLQPPTIIPNLVASLPINGANNHKHPLSLPHDLMTTIPAKPFNNNMAAAFTRSLSSTSQLSSKSPNINMFEENGLLSPHMSATALLQKAAEMGATVNSNSNNNSMMMSGEKSFINVTSMAPPSYGIMNPNMHNGQQDLSQYNFIANGVVDGGSNGMGMSGLDMFNAILDQSKALSKIIEQNNRSSTYNGVLHAMNNGRSSGSIEVGGTKESEDVMTLDLLGIGGGGGGGGDGNFYGGDQQLEMVGGDGIWGNWSNKNAGLESFSATNSTI* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2011 512 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
Gso3g2011 512 MobiDBLite consensus disorder prediction 40 67 - -
Gso3g2011 512 SUPERFAMILY beta-beta-alpha zinc fingers 96 193 IPR036236 -
Gso3g2011 512 SMART c2h2final6 173 193 IPR013087 -
Gso3g2011 512 SMART c2h2final6 138 168 IPR013087 -
Gso3g2011 512 SMART c2h2final6 97 119 IPR013087 -
Gso3g2011 512 MobiDBLite consensus disorder prediction 40 80 - -
Gso3g2011 512 Gene3D Classic Zinc Finger 152 230 - -
Gso3g2011 512 Gene3D Classic Zinc Finger 93 120 - -
Gso3g2011 512 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 45 466 - -
Gso3g2011 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Gso3g2011 512 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Gso3g2011 512 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 45 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2011 Gso-Chr3 45559363 45563622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g2011 46 238 IDZ Gene Family AT3G50700 75.758 2.62e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g2011 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2011 - - gmx:100776872 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1977 19 48404144 48408888 Gso3g2011 3 45559363 45563622 GST
Gso3g2011 3 45559363 45563622 Gso10g1396 10 40374577 40378704 PCT