Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1997 ATGAGTCGAGGAGGTGCAGCAGCAGCGAAGGGAAAGAAGAAGGGTGCTACATTCACCATTGACTGTGCAAAGCCAGTAGAAGACAAGATCATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGGTGGCAAAGCTGGTGCTCTTGGTGACTCTGTTACCGTTACACGTGAGAAGACTAAGATTATTCTCACCTCTGACTGTAACTTTTCCAAACGGTATTTGAAGTACTTGACGAAGAAGTACTTGAAGAAACACAATGTGCGAGACTGGCTCAGAGTGATTGCTTCAAACAAGGATAGAAGTGTTTACGAACTGAGGTACTTCAACATTGCTGAGAATGAGGGAGAGGAAGAAGATTAG 375 0.4427 MSRGGAAAAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKIILTSDCNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1997 124 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 124 - -
Gso3g1997 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Gso3g1997 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Gso3g1997 124 Gene3D - 5 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1997 Gso-Chr3 45451100 45452464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1997 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.097 2.77e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1997 K02891 - gmx:100305556 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1961 19 48274922 48276333 Gso3g1997 3 45451100 45452464 GST
Gso3g1997 3 45451100 45452464 Gso10g1382 10 40228687 40229781 PCT