Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1988 ATGGGGGGAGATGCACAGAAGAAGAGAATTGCCATAATTGGCGTGTCTACCTTCTTGCTGGTGGCCATGGTGGTGGCAGTGACAGTTAGCATCAACCTCAATAACAAGGGATCAAGCTATGATTCAAAGGAAGAAAGCAAATCCAGTGTAGCTTCCTCGATCAAGGCCGTGAAAACCCTTTGCGCACCCACCGATTACAAGAAGGAATGCGAGGACAGTCTTATTGAACATAGCAACAACATCACCGACCCACGAGAACTCATAAAAATCGCGTTCCACGTTACCATCTCAAAAATCGGAGAAGGACTTGAGAAAACAGAACTCATGCACCAGGTCGAGAACGACCCCAGAACCAAGGAGGCACTCGACACTTGCAAGCAACTCATGAACCTCTCCATCGGGGAGTTCACGAGGTCACTCGATAGGTTTACCAAGTTCGACTTGAACAACCTCGACAACATCCTCACCAGTTTGAAGGTTTGGCTCAGCGGTGCAATCACGTACCAAGAAACATGTTTAGACGCATTTGAGAACACAACCACCGATGCTAGTCTAAAAATGCAAAGGCTCTTGCAAAGTGCCATGCACATGAGTAGCAATGGCCTTTCTATCATCACCGAGTTGTCTAAAACTCTCTCGGAAATGCACATCGGCAAACCTGGCCGCCGACGCCTTTTGAACAACAACGTTCTTGGCCACGACTACTTTGACCTTCCCGAATGGGTTGATGATCAAGTTGGTGTTCGCAAACTCCTACATATGACTGGACGGAAACGCATGGCCCATGTGGTTGTTGCAAAGGATGGCAGTGGAAATTTCACCACCATCAATGAAGCATTGAAGCACGTGCCCAAGAAAAACCTAAGGCCATTTGTTATCTACGTCAAGGAAGGAGTTTACAACGAGTACGTCGAAGTTTCCAAAAATATGACCCATGTTGTTATGATTGGTGATGGTGGTAAGAAGTCAAGGATCACCGGCAACAAAAACTTCGTCGATGGGGTTGGGACCTTCAGAACCGCCAGTGCTGCCATTCTAGGAGATTTCTTCGTTGGCATAGGTATGGGGTTTGAGAACTCAGCTGGTGCTGAAAAACATCAAGCAGTGGCCTTGAGGGTTCAAGCTGACAGGTCCATCTTTTACAAATGCCGAATGGATGGGTACCAGGACACACTTTACGCCCACACCATGCGTCAATTCTATCGTGATTGCATAATTTCAGGTACCATCGACTTTGTCTTTGGTGATGCAGTGGCTGTTCTCCAAAATTGCACTTTTGTGGTGCGAAAGCCATTGGAAAACCAGCAATGCATTGTGACTGCACAAGGCAGAAAAGAGATGAACCAACCATCAGGATTAATCATCCAGGGAGGAAGCATTGTGGCAGACCCCATGTACTACCCAGTTAGGTTCGACAACAAAGCTTACTTGGCCCGTCCATGGAAGAATTTCTCGAGAACCATATTTATGGATTCCTACATTGGTGATTTGATCACACCTGATGGTTACATGCCATGGCAAACATTGGAGGGTTTGAGGGGAATGGATACTTGTTTCTACTCTGAGTTCAACAACCGTGGTCCTGGTTCAGACAAAGCCAAGCGTGTCAAATGGGAAGGAATCAAGGCCCTCGATTCAGATGGAATATCAAACTTCTTGCCAGCCAAGTTCTTCCATGGAGATGACTGGATTAGGGTCACTAGGGTTCCTTACTACTCTGGCCAACCCTCCCCCACTCATTGA 1743 0.4699 MGGDAQKKRIAIIGVSTFLLVAMVVAVTVSINLNNKGSSYDSKEESKSSVASSIKAVKTLCAPTDYKKECEDSLIEHSNNITDPRELIKIAFHVTISKIGEGLEKTELMHQVENDPRTKEALDTCKQLMNLSIGEFTRSLDRFTKFDLNNLDNILTSLKVWLSGAITYQETCLDAFENTTTDASLKMQRLLQSAMHMSSNGLSIITELSKTLSEMHIGKPGRRRLLNNNVLGHDYFDLPEWVDDQVGVRKLLHMTGRKRMAHVVVAKDGSGNFTTINEALKHVPKKNLRPFVIYVKEGVYNEYVEVSKNMTHVVMIGDGGKKSRITGNKNFVDGVGTFRTASAAILGDFFVGIGMGFENSAGAEKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDAVAVLQNCTFVVRKPLENQQCIVTAQGRKEMNQPSGLIIQGGSIVADPMYYPVRFDNKAYLARPWKNFSRTIFMDSYIGDLITPDGYMPWQTLEGLRGMDTCFYSEFNNRGPGSDKAKRVKWEGIKALDSDGISNFLPAKFFHGDDWIRVTRVPYYSGQPSPTH* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1988 580 PANTHER PECTINESTERASE 10 577 - -
Gso3g1988 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Gso3g1988 580 SMART PMEI_2 52 204 IPR006501 GO:0004857
Gso3g1988 580 PANTHER PECTINESTERASE 10 577 - -
Gso3g1988 580 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Gso3g1988 580 SUPERFAMILY Pectin lyase-like 262 573 IPR011050 -
Gso3g1988 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Gso3g1988 580 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Gso3g1988 580 Gene3D - 257 575 IPR012334 -
Gso3g1988 580 CDD PMEI-like_3 59 210 - -
Gso3g1988 580 Pfam Pectinesterase 262 561 IPR000070 GO:0030599|GO:0042545
Gso3g1988 580 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Gso3g1988 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 208 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1988 Gso-Chr3 45380377 45382782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1988 6 574 Carbohydrate Esterase AT3G05610 49.037 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1988 K01051 - gmx:100801686 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1950 19 48195724 48198542 Gso3g1988 3 45380377 45382782 GST
Gso3g1988 3 45380377 45382782 Gso10g1378 10 40194034 40196920 PCT