Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1980 ATGGCAACAGAACCAGTTTTAACCTTCTCTCTTGCTTCTGTGGTGGAAGATGTTCTTCAACAACATGATGGTCGATTGGACGTCAACTTGGCATCAAGAAAAGCTGAAGAAGCTTCCTTGAGAAGGTATGAAGCCGCCGGTTGGTTGCGGAAGACAGTTGGAGTTGTTGGAGGGAAAGACTTGCCGGCCGAGCCTTCTGAAGAAGACTTCAGGATTGGATTGCGTAGTGGGATTATCCTATGCAATGTTCTTAACAAAATTCAACCTGGAGCAGTGCCAAAGGTAGTTGAAGGCCCCTGTGATTCTGTTATTATTCCTGATGGAGCAGCATTGTCTGTGTATCAATACTTTGAAAATGTAAGGAATTTTCTTGTGGCTGTAGAGGAAATGGGGCTTCCTTCCTTTGAAGCTTCTGATTTGGAACAGGGAGGAAAATCTTCAAGGATAGTGAATTGTGTTTTAGAGCTCAAAGCCCATGCTGAAAGGAAACTTCGAGGAGGAAATGGGTTGTCGAAATATAGCAGGGTTGCGAAGCCACCTACCTCTGGTAAAACACTTTTGAGGAAAAACTCGGAACCATTCATGAAGTCTATGTGGACTATGACATCAGGGGACAGAGATGGTTATATGAGTGATCCCGGGCATGATCTAAGTGAAAGGGGTTCTGTATCTTCCTTAAATTCACTAGTTCGTCAATATTTGTCTGACAAGAAGCCAGAAGAAATTCCCACTGTAGTCGAATCCCTGTTAAGCAAAGTCATGGAGGAATTTGAGCATCACATGAAAATTCAACATGAAATGTGGAAGATAACTCAAGAAGATAAGGCACCATCTGGAACAGAATGTTCAATTTCAGAAGCTGCTTCTATTAATGAAAGGTTGGAAGAAAAGGAAGATGAACAGGATGAACAAGATGGGCAAAACATACATGATAACCAAGAGGAAAGTTATGAAGAGAAGTACATTGAGCATGAAGATTCAAGCCGCCAGATTTCGATTTTGAAGCAACAAAATATAGTCGAAACGCAGAATCGAAGCATCCAGGAATTGAAAAGCATCGTCCATCAAACAAAATTAGGAATGCAATTCATGCAAAATGAACATCAGAAAGAGATAATTAATCTAAGTAAGCACCTGCATAGCCTAGCTTCTGCTGCTTCAGGATATCATAAAGTTCTTGACGAAAACCGCAAGCTATACAATCTAGTGCAGGATTTGAAAGGAAATATTAGGGTGTACTGTAGAGTTCGGCCCTTCTTAGGTGGGCAACCAAGCCATTATAGCTCAGTTGATAACGTGGAAGAGGGAAGTATCTCGATCATAACACCTTCCAAATACGGCAAAGAGGGGAAAAAAACATTTAATTTCAATAGAGCATTTGGTCCTTCTGCAACCCAAGGGGAAGTTTTCGCAGACACACAACCTCTAATTCGTTCGGTTCTGGATGGTTACAATGTCTGCATATTTGCCTATGGTCAAACAGGATCAGGAAAAACATTCACTATGTCTGGACCAGATGACCTTAACGAGGAAACTATAGGTGTTAACTACCGTGCGCTGAAAGATCTTTTCTATCTCTCGGAGCAGAGGAAAGACACCATTTCTTATGAAATCTCTGTTCAGATGCTTGAGATTTACAATGAGCAAGTCAGGGACCTACTAACTACAGATGGTGCTAAAAGATTAGAAATTCGCAACAGTTCCCATAATGGAATCAACGTGCCAGATGCCAGCCTTGTTCCGGTTTCATGCACTTCTGATGTCATAAATTTGATGAACTTGGGACATAAGAATCGCTCTGTTGGTTCTACCGCCATGAATGATCATAGTAGTCGCTCTCACAGCTGCCTAACAGTTCATGTTCAAGGAAAGAACCTGACATCAGGAAGTACTATTCGTGGTAGTATGCATCTAGTTGACCTGGCAGGAAGTGAAAGAGCTGATAAAACTGAGGCCACAGGGGATAGAATGAAGGAGGCTCAACATATTAACAAGTCACTTTCTGCCTTGGGAGATGTCATTTCTTCCCTTGCCCAAAAGAATGCACATGTTCCTTACAGGAACAGCAAACTTACTCAGCTGCTTCAGGATTCTCTTGGAGGGCAAGCAAAGACTCTCATGTTTGTCCATATAAGTCCGGAGCCAGAAGCTCTGGGAGAAACACTTAGCACACTCAAATTCGCTGAACGAGTCTCCACTGTTGAACTCGGTGCTGCGCGAGTTAATAAAGATAACTTAGATGTGAAAGACCTTAAAGAACAGATTGCTAGTTTGAAGGCAGCCTTAGCGAGAAAAGAGGGAGGAGAAGCAGAACACTTCCAACAATTTGTCAATAGTAGCAGCCATGAAATACCCAAATTGAAATCATACGCATCTTCTCCTCCTATGGAACGTAGTTTGATAGGTGGTGCCCGTAAGTTACCAAAAGATGATTCTAGTAGCCTGGATGGCAAGAAAAATGCTGCATCAAAGTTGAAAAGACGAAGCCTAGATCTCCATGACATGCGTAAGAACTCATCGCCGTGGCCACCTGTTAGAAGTCATGGAAAGGAAGAAGACAAAGAATCAATTTCTGGGGATTGGGTTGATAAAATTTCGATAAACAGAAATGACAGCTTAACTAGTGATGATAGTCTCGTGGGGCAGTGGGAAGCAGAAAGCAAACAATCTTCTCCAATGTCAAGTCCAACCTTTCTCTCAGAGCCTTCTAAAATATGCCTGGACCACTCCTTGCATAGAAAGGATAACCAAGAATTGTTTGATATGTCCACCACATATGAATCTGATGAGCTTGAGATTGCAACTAGTGATTCTGCAGAATCAGACTTACATTGGCCAGCACATATACCTAAACCAATCACCGTTTCAAGCGGACTAGGCATTAAAGCAAGGAAGAAACCAATTAATCTCAGACCAACAAAGAGCCTAGAAGCCAGGAGCATGATCCCATCATTAATTCCTATTCCTGTGCCATCGAGGAAACAACCCACCCTAGTTACTCCAGCAAGAAAAAATCCAGTGTCTATTGATGTGAAGAGAAGGATTGTGAATGCCAAGTGA 3060 0.4219 MATEPVLTFSLASVVEDVLQQHDGRLDVNLASRKAEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEDFRIGLRSGIILCNVLNKIQPGAVPKVVEGPCDSVIIPDGAALSVYQYFENVRNFLVAVEEMGLPSFEASDLEQGGKSSRIVNCVLELKAHAERKLRGGNGLSKYSRVAKPPTSGKTLLRKNSEPFMKSMWTMTSGDRDGYMSDPGHDLSERGSVSSLNSLVRQYLSDKKPEEIPTVVESLLSKVMEEFEHHMKIQHEMWKITQEDKAPSGTECSISEAASINERLEEKEDEQDEQDGQNIHDNQEESYEEKYIEHEDSSRQISILKQQNIVETQNRSIQELKSIVHQTKLGMQFMQNEHQKEIINLSKHLHSLASAASGYHKVLDENRKLYNLVQDLKGNIRVYCRVRPFLGGQPSHYSSVDNVEEGSISIITPSKYGKEGKKTFNFNRAFGPSATQGEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPDDLNEETIGVNYRALKDLFYLSEQRKDTISYEISVQMLEIYNEQVRDLLTTDGAKRLEIRNSSHNGINVPDASLVPVSCTSDVINLMNLGHKNRSVGSTAMNDHSSRSHSCLTVHVQGKNLTSGSTIRGSMHLVDLAGSERADKTEATGDRMKEAQHINKSLSALGDVISSLAQKNAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARVNKDNLDVKDLKEQIASLKAALARKEGGEAEHFQQFVNSSSHEIPKLKSYASSPPMERSLIGGARKLPKDDSSSLDGKKNAASKLKRRSLDLHDMRKNSSPWPPVRSHGKEEDKESISGDWVDKISINRNDSLTSDDSLVGQWEAESKQSSPMSSPTFLSEPSKICLDHSLHRKDNQELFDMSTTYESDELEIATSDSAESDLHWPAHIPKPITVSSGLGIKARKKPINLRPTKSLEARSMIPSLIPIPVPSRKQPTLVTPARKNPVSIDVKRRIVNAK* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1980 1019 MobiDBLite consensus disorder prediction 294 313 - -
Gso3g1980 1019 MobiDBLite consensus disorder prediction 804 835 - -
Gso3g1980 1019 CDD KISc_C_terminal 407 736 - -
Gso3g1980 1019 ProSiteProfiles Kinesin motor domain profile. 409 734 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1980 1019 SMART ch_5 41 159 IPR001715 GO:0005515
Gso3g1980 1019 Coils Coil 284 307 - -
Gso3g1980 1019 Gene3D Kinesin motor domain 404 775 IPR036961 -
Gso3g1980 1019 PRINTS Kinesin heavy chain signature 483 504 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1980 1019 PRINTS Kinesin heavy chain signature 604 621 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1980 1019 PRINTS Kinesin heavy chain signature 635 653 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1980 1019 PRINTS Kinesin heavy chain signature 684 705 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1980 1019 Pfam Kinesin motor domain 415 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1980 1019 PANTHER KINESIN-LIKE PROTEIN KIN-14H 6 1004 - -
Gso3g1980 1019 ProSiteProfiles Calponin homology (CH) domain profile. 39 161 IPR001715 GO:0005515
Gso3g1980 1019 Pfam Calponin homology (CH) domain 42 161 IPR001715 GO:0005515
Gso3g1980 1019 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 1004 - -
Gso3g1980 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 766 IPR027417 -
Gso3g1980 1019 MobiDBLite consensus disorder prediction 804 859 - -
Gso3g1980 1019 SUPERFAMILY Calponin-homology domain, CH-domain 42 170 IPR036872 -
Gso3g1980 1019 SMART kinesin_4 407 742 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1980 1019 Gene3D - 32 163 IPR036872 -
Gso3g1980 1019 Coils Coil 741 768 - -
Gso3g1980 1019 ProSitePatterns Kinesin motor domain signature. 634 645 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1980 Gso-Chr3 45298594 45305097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1980 397 734 Calmodulin-binding Proteins AT5G65930 43.567 7.28e-79 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1940 19 48083008 48089057 Gso3g1980 3 45298594 45305097 GST