Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1970 ATGTCTAACACCAGCAACAATGTCGCTGGGGTCGACAACACATTCAGAAGAAAATTTGATCGAGAAGAGTATCTGGAACGAGCACGGGAGCGCGAGAGACAGGAGGAAGAAGGTCGAGCGAAACCTAAAGGTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCGCTAAGTCAGCAGGCTGGATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTAGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCGAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAGCGTAAAGATGTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTTGAAGAACCTGAAATTGATCCTGATGTTGCTGCCATGATGGGATTTGGAGGTTTCCGGTCATCCAACAAGAAATGA 609 0.4565 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSNKK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1970 202 MobiDBLite consensus disorder prediction 157 202 - -
Gso3g1970 202 Pfam Zinc-finger of C2H2 type 85 109 - -
Gso3g1970 202 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Gso3g1970 202 Coils Coil 148 180 - -
Gso3g1970 202 SUPERFAMILY beta-beta-alpha zinc fingers 80 126 IPR036236 -
Gso3g1970 202 MobiDBLite consensus disorder prediction 20 44 - -
Gso3g1970 202 Gene3D Classic Zinc Finger 79 117 - -
Gso3g1970 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 3 201 IPR040107 GO:0000398|GO:0005681
Gso3g1970 202 MobiDBLite consensus disorder prediction 20 55 - -
Gso3g1970 202 Coils Coil 117 137 - -
Gso3g1970 202 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1970 Gso-Chr3 45221402 45226371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1970 4 147 C2H2 Transcription Factor Family AT3G05760 81.250 1.30e-84 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1970 zf-C2H2_jaz 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1970 K12848 - gmx:100795833 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1930 19 48003206 48006445 Gso3g1970 3 45221402 45226371 GST