Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1966 ATGGTTAACCCAAGTACTATAACTCCCCCATCCTCCGAAGAACACACTTTTCATAATGCTATTGAATCTTCCTCTCACCAAATACCACCATCCTCAAACAAGAGTCGTGGTAGGCCCCTTGGATCCAAGAACAAGCCAAAAATACCCCTCGTTATTAACCAAGATAGCGATCTTGCCTTGAAACCCATCTTCATTCAAGTCCCGAAAAATTCTGATGTTATTGAGGCCGTGGTCCAATTTGCGCGCCAATGTCAAGTTAGCATCACAGTGCAAAGTGCATCTGGGTCTATCTTGGAAGCCACTCTCTGCCAAACTCTTCCTGACACTTCTACTTTCGTTGTTTTTGGACCCTTTACTTTGATTTCCCTCACCGGAACATACATTAATAATAACTGTTCTTTTAGGATTTCCTTTTGTTCAAATTTAGGTCAAAGCTTTACTGGAATTGTTGGAGGAAAGATTATTGCAGGCGATGATGTTAATGTGGTGGTTACTATTCTCAAAGAACTTTGA 513 0.4113 MVNPSTITPPSSEEHTFHNAIESSSHQIPPSSNKSRGRPLGSKNKPKIPLVINQDSDLALKPIFIQVPKNSDVIEAVVQFARQCQVSITVQSASGSILEATLCQTLPDTSTFVVFGPFTLISLTGTYINNNCSFRISFCSNLGQSFTGIVGGKIIAGDDVNVVVTILKEL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1966 170 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 169 IPR014476 GO:0003680
Gso3g1966 170 Pfam Plants and Prokaryotes Conserved (PCC) domain 61 167 IPR005175 -
Gso3g1966 170 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 169 - -
Gso3g1966 170 SUPERFAMILY AF0104/ALDC/Ptd012-like 60 167 - -
Gso3g1966 170 MobiDBLite consensus disorder prediction 1 48 - -
Gso3g1966 170 ProSiteProfiles PPC domain profile profile. 55 170 IPR005175 -
Gso3g1966 170 CDD DUF296 61 167 IPR005175 -
Gso3g1966 170 MobiDBLite consensus disorder prediction 1 39 - -
Gso3g1966 170 Gene3D - 60 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1966 Gso-Chr3 45198860 45200472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1966 33 165 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.483 1.47e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1966 - - gmx:100795303 334.724