Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1963 ATGGAAGCAGTTTACAGGTTGAAACCTCTTTTGCCTTGTCTAGAGGAGGAAGTGGTTAGAGTTGGGAACGCTACTACTTCTGAGATGCGTGTTGGATCAACGGCTAATTGTTGTTACCTGCAGCTGGAAGCTCCTCAACAGAATAATGTAACCGAGTCATCATCAGATATGTCAGATCGGATGATCAAGATCCAGATCGCAAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATAGAATGCCAAAAGGTTGGAGCACCGCCGGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATTGTGGAGGGTCCTGAACTTGACCACTTCATGGAAACATTCTGCGAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCGACGTTATTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGGAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGATGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATCATGTATCTTCTTCTGTAACTTGCCCAAGTGATCAAAGGCTTAAAGAAATGCTCCTTCGCAAATACAGCGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATAGCACTCATGGACTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAAGAGGAGAAAGTGAAGTTGTCAGAAATTACTGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGTCATTGGAAACCAACTGATGACATGCGATCTGCCGTTATGGACGGCATAAGAGGACCTATGTTGTTTTAA 924 0.4405 MEAVYRLKPLLPCLEEEVVRVGNATTSEMRVGSTANCCYLQLEAPQQNNVTESSSDMSDRMIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREIVEGPELDHFMETFCEVLHRYKEELSRPFNEATLFLGDMESQLSNLCNGTLTKSSDNNNRSDEVASGASEEELSCGEMEAFEDHVSSSVTCPSDQRLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARIALMDWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTDDMRSAVMDGIRGPMLF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1963 307 Pfam KNOX1 domain 62 103 IPR005540 GO:0003677|GO:0005634
Gso3g1963 307 Pfam ELK domain 206 227 IPR005539 GO:0003677
Gso3g1963 307 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
Gso3g1963 307 ProSitePatterns 'Homeobox' domain signature. 264 287 IPR017970 GO:0000981|GO:0006355
Gso3g1963 307 SUPERFAMILY Homeodomain-like 228 298 IPR009057 -
Gso3g1963 307 MobiDBLite consensus disorder prediction 157 174 - -
Gso3g1963 307 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677|GO:0005634
Gso3g1963 307 MobiDBLite consensus disorder prediction 157 179 - -
Gso3g1963 307 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677|GO:0006355
Gso3g1963 307 CDD homeodomain 229 289 IPR001356 GO:0003677
Gso3g1963 307 SMART KNOX1_2 60 104 IPR005540 GO:0003677|GO:0005634
Gso3g1963 307 SMART ELK_2 206 227 IPR005539 GO:0003677
Gso3g1963 307 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677
Gso3g1963 307 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 300 - -
Gso3g1963 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 300 - -
Gso3g1963 307 Gene3D - 224 299 - -
Gso3g1963 307 SMART HOX_1 228 293 IPR001356 GO:0003677
Gso3g1963 307 ProSiteProfiles ELK domain profile. 206 226 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1963 Gso-Chr3 45171957 45178130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1963 50 306 Homeobox Transcription Factor Family AT1G23380 52.453 2.10e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso3g1963 KNOX2 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1963 - - gmx:100814830 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1924 19 47965953 47971698 Gso3g1963 3 45171957 45178130 GST
Gso3g1963 3 45171957 45178130 Gso10g1346 10 39835085 39840316 PCT
Gso10g1346 10 39835085 39840316 Gso3g1963 3 45171957 45178130 PCT