Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1960 ATGGAGTCTTTGTCTTTTTCTTTGCACTCAAACCTCCATTCCCTTACTTTGCTGCAACATTCCAATCAAAACAAGAAGCGCCGCAAAATCACACACCAAAACTCCTCAGCTCTCACTCCCTGGACTTCCCATACCGAACACCGCCTCTACTCTTCCAACCTCCTCCACGCGCTCCGCCGCAACAGCAACCCTACCGCCGCCCTCCAAGTCCGCGCCGCCGCAGACCGCGTCCTCGCCGCCACTGCCAAAGGCCGAACTCGCTGGAGCCGCGCCATTCTCGCAAATCCGTTCGGCCGGTGGAGGAAGCAGAGGCAGAGGCACCACAAGAAGGTCAAGAACTGCTCCGCCAACAAATGTATGAAGAAGACCACGCCGGAGATTCGGAGAAGGTTACCGGCGGTGCAGAAGAAGGCGCGCGTTCTCGGAAAGTTAATCCCTGGTTGCCGGAAGGTGTCGTTCCCGAAGCTTCTAGAAGAAGCCGGTGACTATATTTCAGCGTTGGAGATGCAAGTGCGAGCCATGAAGGCTCTCGCAGACCTTCTCCCCACCGGTGCTCCGCCGCCAGATCCGATCGGTTTAAGTTGA 585 0.5692 MESLSFSLHSNLHSLTLLQHSNQNKKRRKITHQNSSALTPWTSHTEHRLYSSNLLHALRRNSNPTAALQVRAAADRVLAATAKGRTRWSRAILANPFGRWRKQRQRHHKKVKNCSANKCMKKTTPEIRRRLPAVQKKARVLGKLIPGCRKVSFPKLLEEAGDYISALEMQVRAMKALADLLPTGAPPPDPIGLS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1960 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 186 IPR036638 GO:0046983
Gso3g1960 194 PANTHER TRANSCRIPTION FACTOR BHLH150 8 192 - -
Gso3g1960 194 CDD bHLH_AtIBH1_like 128 178 IPR044549 GO:0006355
Gso3g1960 194 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 8 192 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1960 Gso-Chr3 45135758 45136663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1960 34 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 45.806 4.31e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1960 - - gmx:100813766 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1921 19 47919282 47920196 Gso3g1960 3 45135758 45136663 GST
Gso3g1960 3 45135758 45136663 Gso10g1339 10 39727781 39728790 PCT
Gso10g1339 10 39727781 39728790 Gso3g1960 3 45135758 45136663 PCT