Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1944 ATGGCTTCAGTTGGTGTGGCACCAACATCATCAGGCTTGAGAGAATCCAGTGGTGTTGATAGATTGCCTGAGGAGATGAATGATATGAGAATTAGGGACGATAAAGAAATGGAAGCCACCGTTGTCGATGGTAACGGAACGGAGACCGGACATATCATTGTTACTACCATTGGGGGTAGAAATGGTCAACCGAAGCAGACTATAAGCTATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAAGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTCTGTTTGAAGCATTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTAATCGTGTGATCAAACATTACAACAAGTTGAACCAACGGATGCCTCTGATATATGTAAAACTCTATACATACCAGATCTTTAGGGCACTATCTTATATTCATCGTTGCATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTTAATCCGCACACTCACCAGGTTAAAATATGTGACTTTGGAAGTGCAAAAGTCTTGGTGAAAGGCGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACATTTGGTCAGTTGGCTGTGTATTGGCTGAGCTTATGCTTGGACAGCCCTTGTTCCCCGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGATCTTTCACAAGCGCATGCCTCCAGAAGCTGTTGATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATGCGAGGAAGCAGTGCCCGTTTCTTGGCTTGTGA 1221 0.4242 MASVGVAPTSSGLRESSGVDRLPEEMNDMRIRDDKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELMLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDTLTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPVEILVKLIPEHARKQCPFLGL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1944 406 CDD STKc_GSK3 65 357 IPR039192 -
Gso3g1944 406 MobiDBLite consensus disorder prediction 1 25 - -
Gso3g1944 406 Gene3D Transferase(Phosphotransferase) domain 1 150 398 - -
Gso3g1944 406 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1944 406 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 404 - -
Gso3g1944 406 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 404 - -
Gso3g1944 406 Gene3D Phosphorylase Kinase; domain 1 54 149 - -
Gso3g1944 406 SUPERFAMILY Protein kinase-like (PK-like) 69 380 IPR011009 -
Gso3g1944 406 ProSitePatterns Protein kinases ATP-binding region signature. 76 100 IPR017441 GO:0005524
Gso3g1944 406 Pfam Protein kinase domain 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1944 406 MobiDBLite consensus disorder prediction 1 16 - -
Gso3g1944 406 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1944 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1944 Gso-Chr3 45004698 45009213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1944 76 382 MAP Kinase Gene Family AT2G43790 35.110 3.88e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso3g1944 Pkinase 8.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1944 K00924 - gmx:100788612 835.869