Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1940 ATGGGGTCTAATCTTAATGCTGAATTATCCAAGAAAACTCCCATTTTTGGTCTAAAAGTTTGGGAAATATTTGGAATTGTAGTTGGATTGTCTATAATAGTCATTCTTTCTGTGGTCTCACTTTGCCTAACCTCAAGGAAGAAATCTAGAAAAGATAAAGACAAGATTCCCCTTAGTCAAATACCAACTGTCTCAAAGGAAATCAAGGAAGTGCGGGTTGAACAAGTGCCAACTAATGTATTTGCTCCTCGTGATGGAATACTTCTCACGATTCAGGATAAGTCCAGTGACAAGGAATCAGACAAGGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGAGATAGTGGCACTCACTCAGATTCATTTCATTACATTGAGAAAGATGGAGGCGTTTCACACTCACAGTCAGGAGAAGAAGGTAGCTCTGGCACGGTTACAGTGTACAAGCAATCTTCTTCATACCCTATAACAGCTCCTTCACCTCTATCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCTACGAACCGTTTTTCCAAAGAAAATGTCCTCGGTGAAGGCGGCTATGGAGTGGTTTATAGGGGACAGTTGATCAATGGAACTCCAGTGGCAGTTAAAAAGATACTTAATAACACAGGTCAAGCAGAGAAAGAATTTAGAGTAGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGAACTCTCAGGATGTTAGTTTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGTCACCATGGATACCTTACGTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCCAAAGCGCTAGCGTATTTGCATGAAGCAATTGAGCCAAAGGTGGTGCACCGTGATGTAAAGTCAAGCAACATATTAATTGATGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAATTATTGGGTGCTGGGAAGAGTTATGTCACAACAAGAGTTATGGGAACTTTTGGATATGTGGCTCCTGAATATGCAAATACTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGTAGAGATCCAGTTGACTATGGTCGACCAGCAAATGAAGTGAACCTTGTTGATTGGCTGAAAATGATGGTTGGAAACAGGAGATCAGAAGAAGTGGTGGACCCCAACATTGAGGTGAAGCCATCCACCAGAGCTTTAAAACGGGCTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCCCAGAAGGAATATTCTGACACAGACAGGAGTGAGATTCAGGATTCAAGAGAAGAAAGAAGAGGGTGA 1533 0.4253 MGSNLNAELSKKTPIFGLKVWEIFGIVVGLSIIVILSVVSLCLTSRKKSRKDKDKIPLSQIPTVSKEIKEVRVEQVPTNVFAPRDGILLTIQDKSSDKESDKVMVHLGVGKMKNGDSGTHSDSFHYIEKDGGVSHSQSGEEGSSGTVTVYKQSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTPVAVKKILNNTGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTLRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDVKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPLPREDRRHRRRNREGSGEIESQKEYSDTDRSEIQDSREERRG* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1940 510 MobiDBLite consensus disorder prediction 449 510 - -
Gso3g1940 510 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1940 510 SUPERFAMILY Protein kinase-like (PK-like) 175 471 IPR011009 -
Gso3g1940 510 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Gso3g1940 510 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 508 - -
Gso3g1940 510 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Gso3g1940 510 CDD STKc_IRAK 197 463 - -
Gso3g1940 510 Gene3D Transferase(Phosphotransferase) domain 1 267 478 - -
Gso3g1940 510 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1940 510 PANTHER OS01G0323000 PROTEIN 3 508 - -
Gso3g1940 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Gso3g1940 510 Pfam Protein kinase domain 192 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1940 Gso-Chr3 44961710 44966923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1940 168 465 Trihelix Transcription Factor Family AT1G70460 49.835 3.20e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso3g1940 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1940 - - gmx:100787014 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1940 3 44961710 44966923 Gso2g2053 2 45143044 45151695 PCT
Gso10g1321 10 39514485 39519190 Gso3g1940 3 44961710 44966923 PCT