LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1940	ATGGGGTCTAATCTTAATGCTGAATTATCCAAGAAAACTCCCATTTTTGGTCTAAAAGTTTGGGAAATATTTGGAATTGTAGTTGGATTGTCTATAATAGTCATTCTTTCTGTGGTCTCACTTTGCCTAACCTCAAGGAAGAAATCTAGAAAAGATAAAGACAAGATTCCCCTTAGTCAAATACCAACTGTCTCAAAGGAAATCAAGGAAGTGCGGGTTGAACAAGTGCCAACTAATGTATTTGCTCCTCGTGATGGAATACTTCTCACGATTCAGGATAAGTCCAGTGACAAGGAATCAGACAAGGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGAGATAGTGGCACTCACTCAGATTCATTTCATTACATTGAGAAAGATGGAGGCGTTTCACACTCACAGTCAGGAGAAGAAGGTAGCTCTGGCACGGTTACAGTGTACAAGCAATCTTCTTCATACCCTATAACAGCTCCTTCACCTCTATCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCTACGAACCGTTTTTCCAAAGAAAATGTCCTCGGTGAAGGCGGCTATGGAGTGGTTTATAGGGGACAGTTGATCAATGGAACTCCAGTGGCAGTTAAAAAGATACTTAATAACACAGGTCAAGCAGAGAAAGAATTTAGAGTAGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGAACTCTCAGGATGTTAGTTTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGTCACCATGGATACCTTACGTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCCAAAGCGCTAGCGTATTTGCATGAAGCAATTGAGCCAAAGGTGGTGCACCGTGATGTAAAGTCAAGCAACATATTAATTGATGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAATTATTGGGTGCTGGGAAGAGTTATGTCACAACAAGAGTTATGGGAACTTTTGGATATGTGGCTCCTGAATATGCAAATACTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGTAGAGATCCAGTTGACTATGGTCGACCAGCAAATGAAGTGAACCTTGTTGATTGGCTGAAAATGATGGTTGGAAACAGGAGATCAGAAGAAGTGGTGGACCCCAACATTGAGGTGAAGCCATCCACCAGAGCTTTAAAACGGGCTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCCCAGAAGGAATATTCTGACACAGACAGGAGTGAGATTCAGGATTCAAGAGAAGAAAGAAGAGGGTGA	1533	0.4253	MGSNLNAELSKKTPIFGLKVWEIFGIVVGLSIIVILSVVSLCLTSRKKSRKDKDKIPLSQIPTVSKEIKEVRVEQVPTNVFAPRDGILLTIQDKSSDKESDKVMVHLGVGKMKNGDSGTHSDSFHYIEKDGGVSHSQSGEEGSSGTVTVYKQSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTPVAVKKILNNTGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTLRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDVKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPLPREDRRHRRRNREGSGEIESQKEYSDTDRSEIQDSREERRG*	511

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso3g1940	510	MobiDBLite	consensus disorder prediction	449	510	-	-
Gso3g1940	510	SMART	serkin_6	191	462	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso3g1940	510	SUPERFAMILY	Protein kinase-like (PK-like)	175	471	IPR011009	-
Gso3g1940	510	Gene3D	Phosphorylase Kinase; domain 1	173	266	-	-
Gso3g1940	510	PANTHER	RECEPTOR-LIKE PROTEIN KINASE-RELATED	3	508	-	-
Gso3g1940	510	ProSitePatterns	Protein kinases ATP-binding region signature.	197	220	IPR017441	GO:0005524
Gso3g1940	510	CDD	STKc_IRAK	197	463	-	-
Gso3g1940	510	Gene3D	Transferase(Phosphotransferase) domain 1	267	478	-	-
Gso3g1940	510	ProSiteProfiles	Protein kinase domain profile.	191	470	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso3g1940	510	PANTHER	OS01G0323000 PROTEIN	3	508	-	-

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1940	Gso-Chr3	44961710	44966923	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1940	168	465	Trihelix Transcription Factor Family	AT1G70460	49.835	3.20e-91	291

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-V	Gso3g1940		Pkinase	4.3e-46	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1940	-		-	gmx:100787014	954.51

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso3g1940	3	44961710	44966923	Gso2g2053	2	45143044	45151695	PCT
	Gso10g1321	10	39514485	39519190	Gso3g1940	3	44961710	44966923	PCT

Showing 1 to 2 of 2 entries

Previous1Next