Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1937 ATGGACGGAGATGGAGCGACGACGATCGCGGAGGCGCAGTACGCGACGGCGAAGACATCGGTGTGGTGGGACATCGAGAACTGCCACGTCCCCAAGGGTTCGGATCCGCACGCCATCGCGCAGAACATCAGTTCTGCTCTCGTTCGCATGAACTACTGCGGCCCCGTCTCCATCTCCTCCTACGGCGACACCACGCGCATCCCAGCATCTGTACAGCACGCGCTCTCCAGTACCGGAATCTCCCTCAATCACGTCCCGGCCGGTGTGAAAGACGCAAGAGACGAGAAGATTCTTGTTGATATGCTGTTCTGGGCACTGGACAATCCCGCACCTGCTAATTATTTATTAATTTCGGGTGACCGAGACTTCTCGAATGCTCTCCATCAACTTCGGATGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAGGCATCTGCACCCCTAGTTGCAGCCGCCAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGACCTCCTCTTTCTAATGGTGAATCACAACAACTTGGTAATGGTAGCCTCAGCCATGTATCATCTTCTGACTCCTTACAAATTCCGGTTACAAGTGCTACTCAGATACAACAACAGGTGGATTCCTACTCAGAAGTACATGTAGGAAATTCAAAATTTACAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGGAAAACAAATTGGAGAAACCTGAGCCAATCGAATGGACCTAGAGCCATGAATCCTCTGCCTGTTGTACTTCAAGATAATCGTAATCGTAATAATGCAAACTCTTCTCAACCTGGCAACTTTAATCTAAATGTTCCATCAAGTGCTACAAATCATGGTCATGGCAATACTGATCAGTTATGGAGCAATAACAGTAATCTACAGGGCAATCATCAAATCCCTTATTCACAGCCATTAAGACCAAACAACTTCCCATTGCAACCTCCTTTTGCACCTAGTAATTCATATACACCAAATTCCCATACTTTTCCAACTTCAGTGGTTCCACCTAGGACTGGTGGTCCCAATTTCACTTCAGGACCACATACCAATGTGCCAGATATTGGTAGTCTGAGCATTTCTGGATATCCTAATAGTGTTCATAACCCACCTATTGTTCCGCAACGGAGTGGAGAGTTGAAACAGAATCCTAATAGTAATGCTCCACTTCTTTTAAGATCAATTGATGACAAAAATGGACATATGGTACAGAACAGTGGCACACAACAATTACACCAAGGTTATCAACATGGTCCAGAATATCAACCTATGCCGTTGGCAGCAATGGGTAATAATAACCCTTCTGGTAATGGTATGTGGGGTTCTCCGGGATGTCCTAAACCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCACTAAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGACTGCATCCGGTATGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAAAGTGCTATAGAGCAGAATATGGTGGTGAAACAAAATTTAGGTGCTTTGCCGTTGTATGTTGGTAAGAATGATAAACTTTGGAAATGTGTAAATCCTTTAGGTGGTACTCCTAAGCAGCATTCAAAAGAAACATGGGATCAAATTGGAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCACTAATGGGTACACAGTGCAAGTATGAAGCAGGTATTGTGATTAAGAGTATGTGCTTTAAAGATCTTGTTTTGGGTGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGGTTACACATCATCCATCTGGTTGGCAGCCACTTAACATTACTCTTCCCGAGATAAACCCCACTTCAGGGGTTGTAGCTGGTGCATAA 1893 0.4427 MDGDGATTIAEAQYATAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISSYGDTTRIPASVQHALSSTGISLNHVPAGVKDARDEKILVDMLFWALDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSSSDSLQIPVTSATQIQQQVDSYSEVHVGNSKFTNGGRGFDSRYQGKTNWRNLSQSNGPRAMNPLPVVLQDNRNRNNANSSQPGNFNLNVPSSATNHGHGNTDQLWSNNSNLQGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPNSHTFPTSVVPPRTGGPNFTSGPHTNVPDIGSLSISGYPNSVHNPPIVPQRSGELKQNPNSNAPLLLRSIDDKNGHMVQNSGTQQLHQGYQHGPEYQPMPLAAMGNNNPSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGTPKQHSKETWDQIGKFLTTPAGRSALMGTQCKYEAGIVIKSMCFKDLVLGDVLQILNMLITHKKWVTHHPSGWQPLNITLPEINPTSGVVAGA* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1937 630 MobiDBLite consensus disorder prediction 254 310 - -
Gso3g1937 630 CDD PIN_limkain_b1_N_like 18 142 - -
Gso3g1937 630 MobiDBLite consensus disorder prediction 341 395 - -
Gso3g1937 630 Pfam NYN domain 18 154 IPR021139 GO:0004540
Gso3g1937 630 PANTHER LIMKAIN B LKAP 1 615 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso3g1937 630 MobiDBLite consensus disorder prediction 219 246 - -
Gso3g1937 630 Gene3D - 10 161 - -
Gso3g1937 630 Pfam OST-HTH Associated domain 567 617 IPR025677 -
Gso3g1937 630 MobiDBLite consensus disorder prediction 219 313 - -
Gso3g1937 630 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 1 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1937 Gso-Chr3 44925478 44939671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1937 8 200 C2H2 Transcription Factor Family AT5G61190 68.912 8.30e-84 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1937 - - gmx:100808926 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1901 19 47736622 47741035 Gso3g1937 3 44925478 44939671 GST