Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1921 ATGGCTTCTATCATAGGCGTTTCCTCCATTTACCAAACACCTTCTCTCGAACTATACCAGAGGCCAAATACTGCTGCCTCCACTTCCTCCGTTAGGTTGCAATGTTTAGACTCCAAGTCTCACTTCAACAACGTCCTCCGAGCCCACCAACGCCACTCCACTGGGCCGGGCCTCAAGCCCACACCGACTACTTTCGTCCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTTGGCCGCGACTTCGACGAATTCGACCACGCCTCCGATTCCGACTCCGCCGCCGAATCCGTTCACCCCGACGAGCTTGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTCGAGTCTCTCCAGAGCCGTGGAATTACTCAACTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCGCGAGCCAAGACCGGTACCGGAAAGACGTTAGCGTTCGGAATTCCTATTATTAAAGGCCTCACTGAAGATGAACACGCACCTTCTCACAGGAGGTCTGGTAGGCTTCCGAGATTTTTGGTGCTTGCGCCTACGAGAGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTACCTGAGCACTGTTTGTGTTTACGGTGGTGTTTCTTATGTTACTCAGCAGGGTGCGCTTTCGCGTGGTGTTGACGTGGTGGTTGGGACACCAGGGAGAATAATTGACTTGATAAACGGGAACAGCCTTAAGCTCAGTGAGGTTCAGTATTTGGTTCTCGATGAAGCGGACCAGATGCTTGCTGTTGGGTTTGAGGAAGACGTGGAAATGATTCTAGAGAATCTTCCAGCTCAAAGGCAGAGCATGCTTTTCTCTGCTACCATGCCCAGTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAATCCACTCACAATTGATTTGGTTGGTGATGAAGAGGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACTGTTTACGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGTCATTAACAAATAGTATAATGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACACTGAATGGTTTCCGTCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTGGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAACAAGGTAATGCCATTCTTCTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTCGAACGTGATGTCGGATGCAAGTTTGAATTTGTTAGTGCACCGGCTATGGAAGAGGTTTTGGAGTCATCTGCTGAGCAGGTTGTTGCCACACTTGGTGGAGTTCATCCTGAGTCTGTTCAGTTTTTCACCCCAACTGCACAGAGACTGATCGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTCGCACAACTGAGTGGATTTTCCCGACCACCATCATCCCGGTCTCTTATCACCCATGAACAGGGATGGATTACATTGCAACTAACTCGAGATTCAGATAGTAGAAGATATTTTTCAGCAAGATCAATCACTGGGTTTCTTTCTGATGTTTATCCTGCAGCTGCTGATGAAGTTGGAAAAATCCATTTAATTGCAGATGAAAAGGTTCAAGGAGCTGTTTTTGATCTTCCTGAGGAGATTGCTAAAGAATTACTTAATAGGGACATACCACCTGGAAACACCGTTTCCAAGATCACCAAGCTACCTTCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCTGACAGAGATAGAAGTAGCCGAAGAGGTTCTACTTCTAGGGGAGGTTTTAGTTCTAGGGGAGGTTCCGCTTCTAGGGACCGGAGAGGTTTTAAATCCTCACGGGGCTGGGATGTGGAAGACTCCAATGATGACTTTGGTGATCAATCCAGTAGGAGAGGTGGTAGAAATTTTAAAACTGGCAACAGCTGGTCTCGAGCAGCAGGTAAAAGCAGTGGCGATGATTGGCTAATTGGAGGTGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAGGGACCTGTTTTAATTGCGGGGAATCTGGGCATCGTGCATCAGATTGTCCAAACGTTTCAAACAGACGAAGCTTTTTTTAA 2316 0.4741 MASIIGVSSIYQTPSLELYQRPNTAASTSSVRLQCLDSKSHFNNVLRAHQRHSTGPGLKPTPTTFVPSAVATPNSSLLSEEAFKGLGRDFDEFDHASDSDSAAESVHPDELDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQGALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPESVQFFTPTAQRLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDSRRYFSARSITGFLSDVYPAAADEVGKIHLIADEKVQGAVFDLPEEIAKELLNRDIPPGNTVSKITKLPSLQDDGPPSDFYGRFSDRDRSSRRGSTSRGGFSSRGGSASRDRRGFKSSRGWDVEDSNDDFGDQSSRRGGRNFKTGNSWSRAAGKSSGDDWLIGGGRRSSRPSSSDRFGGTCFNCGESGHRASDCPNVSNRRSFF* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1921 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 493 IPR001650 -
Gso3g1921 771 SMART c2hcfinal6 747 763 IPR001878 GO:0003676|GO:0008270
Gso3g1921 771 SMART helicmild6 373 453 IPR001650 -
Gso3g1921 771 Gene3D - 112 323 IPR027417 -
Gso3g1921 771 MobiDBLite consensus disorder prediction 704 720 - -
Gso3g1921 771 Gene3D - 720 769 - -
Gso3g1921 771 CDD DEADc 122 320 - -
Gso3g1921 771 Pfam DEAD/DEAH box helicase 135 308 IPR011545 GO:0003676|GO:0005524
Gso3g1921 771 Pfam Helicase conserved C-terminal domain 346 453 IPR001650 -
Gso3g1921 771 MobiDBLite consensus disorder prediction 676 703 - -
Gso3g1921 771 Gene3D - 337 526 IPR027417 -
Gso3g1921 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 474 IPR027417 -
Gso3g1921 771 PANTHER - 61 760 - -
Gso3g1921 771 SUPERFAMILY Retrovirus zinc finger-like domains 731 767 IPR036875 GO:0003676|GO:0008270
Gso3g1921 771 CDD SF2_C_DEAD 333 462 - -
Gso3g1921 771 Pfam Zinc knuckle 746 763 IPR001878 GO:0003676|GO:0008270
Gso3g1921 771 ProSiteProfiles Zinc finger CCHC-type profile. 748 763 IPR001878 GO:0003676|GO:0008270
Gso3g1921 771 MobiDBLite consensus disorder prediction 752 771 - -
Gso3g1921 771 SMART ultradead3 130 336 IPR014001 -
Gso3g1921 771 CDD GUCT_Hera 547 626 - -
Gso3g1921 771 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 319 IPR014001 -
Gso3g1921 771 MobiDBLite consensus disorder prediction 647 661 - -
Gso3g1921 771 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 760 - -
Gso3g1921 771 MobiDBLite consensus disorder prediction 622 746 - -
Gso3g1921 771 Pfam GUCT (NUC152) domain 540 639 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1921 Gso-Chr3 44755426 44761147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1921 57 475 Eukaryotic Initiation Factors Gene Family AT1G72730 35.514 2.46e-65 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1886 19 47580780 47586308 Gso3g1921 3 44755426 44761147 GST
Gso3g1921 3 44755426 44761147 Gso10g1296 10 38998533 39004927 PCT
Gso10g1296 10 38998533 39004927 Gso3g1921 3 44755426 44761147 PCT