Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1914 ATGGGAAAGTTCATTTTGAGTACTGGTCTTATATTGTTTGTGGTGTTATTCACTACTGAACTTGGAGTAGCATCAGCTGTTTGGCAGCGAGCTCATGCAACTTTCTATGGTGGGAGTGATGCCTCAGGAACAATGGGAGGTGCATGTGGCTATGGAAATCTCTACACAGATGGTTATGGCACAAAAACAGCTGCCCTGAGCACTGTTTTGTTTAATGATGGAAAATCATGCGGTGGTTGCTATAGGATAGTTTGTGACGCAAGCCAAGTGCCCCAATGGTGCCTCAGGGGCACTTCCATCGATATTACTGCCACAAATTTCTGCCCCCCAAACCTCGCACTTCCTAATGACAATGGCGGTTGGTGTAATCCCCCTAGACCACACTTTGACATGTCTCAACCTGCCTTTCAGACAATAGCCAAGTACAAAGCTGGAATTGTACCAATCTTGTACATGAAAGTTGGGTGCAAAAGAAGTGGAGGCATCAGATTTACCATCAATGGAAGGGACTATTTCGAATTGGTGCTTATAAGCAACGTAGGTGGAGCTGGAGAGATTTCCCGAGTTTGGGTTAAAGGGTCCAGAATGAATAATTGGGAATCCATGACGAGGAATTGGGGTGCTAACTGGCAAAGCTTAAGATATGTGAATGGTCAGAGTTTGTCTTTCAGAGTTCAACTCCGCAATGGGAAGACTCGCACGGCAAATAATGTAGCACCGTCCAATTGGAGATTTGGCCAGTCTTTCTCCAGCAATGTTCAGTTCTGA 768 0.4531 MGKFILSTGLILFVVLFTTELGVASAVWQRAHATFYGGSDASGTMGGACGYGNLYTDGYGTKTAALSTVLFNDGKSCGGCYRIVCDASQVPQWCLRGTSIDITATNFCPPNLALPNDNGGWCNPPRPHFDMSQPAFQTIAKYKAGIVPILYMKVGCKRSGGIRFTINGRDYFELVLISNVGGAGEISRVWVKGSRMNNWESMTRNWGANWQSLRYVNGQSLSFRVQLRNGKTRTANNVAPSNWRFGQSFSSNVQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1914 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gso3g1914 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Gso3g1914 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Gso3g1914 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Gso3g1914 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Gso3g1914 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Gso3g1914 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Gso3g1914 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Gso3g1914 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Gso3g1914 255 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Gso3g1914 255 SMART dpbb_1 63 151 IPR007112 -
Gso3g1914 255 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Gso3g1914 255 Gene3D - 161 255 IPR036749 -
Gso3g1914 255 SUPERFAMILY Barwin-like endoglucanases 21 179 IPR036908 -
Gso3g1914 255 Gene3D - 18 157 IPR036908 -
Gso3g1914 255 PANTHER EXPANSIN-A15 7 255 IPR002963 GO:0009664
Gso3g1914 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Gso3g1914 255 Pfam Lytic transglycolase 63 151 IPR009009 -
Gso3g1914 255 PANTHER EXPANSIN 7 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1914 Gso-Chr3 44688496 44689823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1914 11 255 Expansin Gene Family AT4G01630 75.918 8.11e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1914 - - gmx:100777045 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1879 19 47500051 47501430 Gso3g1914 3 44688496 44689823 GST
Gso3g1914 3 44688496 44689823 Gso10g1291 10 38925072 38926698 PCT
Gso10g1291 10 38925072 38926698 Gso3g1914 3 44688496 44689823 PCT