Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1910 ATGAAGGTGATTCTATTACTCATAGCAGCATCATTTTCCTTTGTTTCTGTACTTAGATCTGAGGCTGAGCATTTGTTCCAAAACGATGCCGTTTCACTGGCAGTGGAAGTACCGCCCGGACCTCCACCTCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAGGGAGGAGGATGGTGTAATACCATCAGTAGTTGTGTCTTTAGAAAAACTACTCGTCGTGGTTCCTCAAAATACATGGAAAAGCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAAACGAGGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAGGAATTATTGTTCAAGGGAATGCAGAAGGCCAACCAGGCCCTTTTGTCTGGATGCTCTGCAGGTGGTCTGGCATCTATAATACATTGTGATGAGTTCCGGAGCTTGTTTCCTACATCTACCAAAGTGAAATGTTTGAGTGATGCCGGGTTTTTCCTAGATGCAGTTGATGTATCTGGGGGTCACACACTGAGGAATCTGTTTGGAGGTGTAGTTAAGTTACAGGAGGTGCAAAAAAATCTGCCAAATAGTTGTCTCAACCAACTGGACCCAACTTCGTGTTTTTTTCCTCAGAATTTGATCAACTATGTTGAGACTCCACTGTTTCTGCTCAATGCAGCTTATGATGCATGGCAGGTCCAAGAAAGTTTGGTCCCACATTCAGCAGATCCCCATGGCTCTTGGAATGATTGTAAAGCAAATCATGCACACTGTAACTCATCTCAAATTCAGTTCCTCCAAGACTTCAGAAATCAAATGCTAAATGATGTGAAAGGCTTCTCTGAGACATCTCAAACTGGGTTATTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTAACAACGTGCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCTTCAATGCTGGTAAATCTGCTGCGGTGGACTACCAGTCCACAAGTGATGATGGCATACCTACCAATACCATGACCATGATATATTCCCACTCCACGAGGCTGACTTTTAGTACTGGCCTATATATGCTACGTGTTTTATCGGCATTTACATGTTCCTAG 1380 0.4377 MKVILLLIAASFSFVSVLRSEAEHLFQNDAVSLAVEVPPGPPPLMVPLTLIQGAASKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNTISSCVFRKTTRRGSSKYMEKQLAFTGLLSNKAEENPDFFNWNRVKVRYCDGASFSGDSQNEVAQLQFRGQKIWQAAMQELLFKGMQKANQALLSGCSAGGLASIIHCDEFRSLFPTSTKVKCLSDAGFFLDAVDVSGGHTLRNLFGGVVKLQEVQKNLPNSCLNQLDPTSCFFPQNLINYVETPLFLLNAAYDAWQVQESLVPHSADPHGSWNDCKANHAHCNSSQIQFLQDFRNQMLNDVKGFSETSQTGLFINSCFAHCQSERQDTWFADDSPLINNVPVAIAVGDWFLDRKTVKAIDCAYPCDNTCHNLVFNAGKSAAVDYQSTSDDGIPTNTMTMIYSHSTRLTFSTGLYMLRVLSAFTCS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1910 459 Pfam Pectinacetylesterase 44 389 IPR004963 GO:0016787
Gso3g1910 459 PANTHER NOTUM-RELATED 1 424 IPR004963 GO:0016787
Gso3g1910 459 PANTHER PECTIN ACETYLESTERASE 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1910 Gso-Chr3 44653641 44659395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1910 44 409 Carbohydrate Esterase AT2G46930 73.497 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1910 K19882 - gmx:100785270 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1874 19 47457605 47463558 Gso3g1910 3 44653641 44659395 GST
Gso3g1910 3 44653641 44659395 Gso2g0058 2 696808 701431 PCT
Gso3g1910 3 44653641 44659395 Gso10g1283 10 38851771 38861676 PCT
Gso2g0058 2 696808 701431 Gso3g1910 3 44653641 44659395 PCT
Gso10g1283 10 38851771 38861676 Gso3g1910 3 44653641 44659395 PCT