Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1908 ATGGGAAGGCACTCTTGCTGTTACAAACAGAAACTTAGGAAGGGTCTTTGGTCACCAGAAGAAGATGAAAAACTTTTGAGGCATATCACTAAGTACGGTCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGCAAAAGCTGCAGGCTTAGGTGGATCAATTATTTAAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAATCTCATCATTGAACTTCATGCAGTGCTAGGGAACAGATGGTCTCAAATTGCAGCACAATTGCCAGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCTTAAAGAAGAAACTCAGGCAAAGAGGAATAGACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGAGAGGAGGGCAAAACGAGGAGCCAAGAATTATCCAATGAACTGAACCTCCTGAATTCAGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCATCAATTGCCCCCAAAGCCTATGAGATGGAAGGCTCTTGCAGCTCCAAGATTAACAACACCAAAAACGACACCAACTTGATGTCCAATTGTTCCAACAAAGACATGTTCCTAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAAATTACCCTCTTCATATCACTGACACTCTCCCAACCAATTCAAACTCTTGCCATTGGTTCAGCCAAACTGCAAGACCCTTTGATATAAACTCAAACTCTGAGTTTACAATTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTCCTCCCAAGTACTTCTTTTTGCTACAAGTCATCACTTGGTGTCCCTTCAGAAGATATTTCAGCACCCTCTTTTGGATTGAATGGTCCCAGTTACTGGGAAGCAAGTGCCTCCAACAACAGCAATGGAAGCAACAACACGAGTGATGGCAGCAGAGAGTTGACAACTACAAGTAGCAAGAACAGTGTGCTCTCTTCTTGGGAATTGACAGAAGAAGCAAAGTGGTCTGAGTACCTCCACAACCCAATGTTAATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGATACCTGATAACACTTTAGGGGCAATAATATTGCCTGATTCCAAGAATCAACAACAACAACAACAACAACAACAGTCTCAAAATTCTTGCATCTTCTCCAAGGACGTGCAGAAGCTAACAGCAGCATTTGGACATATATAG 1260 0.4333 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEEGKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKINNTKNDTNLMSNCSNKDMFLDSYTTSCQPSDLMGNYPLHITDTLPTNSNSCHWFSQTARPFDINSNSEFTITSNVMSILPPTTTSFLPSTSFCYKSSLGVPSEDISAPSFGLNGPSYWEASASNNSNGSNNTSDGSRELTTTSSKNSVLSSWELTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLIPDNTLGAIILPDSKNQQQQQQQQQSQNSCIFSKDVQKLTAAFGHI* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1908 419 MobiDBLite consensus disorder prediction 122 144 - -
Gso3g1908 419 PANTHER MYB DOMAIN PROTEIN 55 1 396 - -
Gso3g1908 419 Gene3D - 69 144 - -
Gso3g1908 419 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso3g1908 419 CDD SANT 17 61 IPR001005 -
Gso3g1908 419 SMART sant 13 63 IPR001005 -
Gso3g1908 419 SMART sant 66 114 IPR001005 -
Gso3g1908 419 Gene3D - 11 67 - -
Gso3g1908 419 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso3g1908 419 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso3g1908 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso3g1908 419 PANTHER MYB DOMAIN PROTEIN 55 1 396 - -
Gso3g1908 419 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso3g1908 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso3g1908 419 MobiDBLite consensus disorder prediction 122 143 - -
Gso3g1908 419 MobiDBLite consensus disorder prediction 307 328 - -
Gso3g1908 419 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso3g1908 419 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1908 Gso-Chr3 44632096 44634101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1908 1 156 MYB Transcription Factor Family AT4G01680 84.615 8.36e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g1908 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1908 K09422 - gmx:100819449 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1872 19 47436398 47438301 Gso3g1908 3 44632096 44634101 GST
Gso3g1908 3 44632096 44634101 Gso2g0060 2 709230 711272 PCT
Gso3g1908 3 44632096 44634101 Gso10g1282 10 38841750 38843934 PCT
Gso2g0060 2 709230 711272 Gso3g1908 3 44632096 44634101 PCT
Gso10g1282 10 38841750 38843934 Gso3g1908 3 44632096 44634101 PCT