Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1906 ATGATTCAGAAGATGTTTGACCCCAGCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTTATGACAATGATTTCCTTGAGTTGGTGTGGGAAAACGGTGAGGTTGTTGTACGAGGAGGTTCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACAAGGTTAAACCCATTATTATACTCACTTGAAGATCACTTTCCACCTCAAAGGGACTCTGACATGAGCACTTCACACCAAAGCAATGGCCAAGATTCGTGTGGTCAATCCTCCCAAAGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTAGCATAGGCAATAATCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACAGTAGATTCAACTCAAACACCACCAACACCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCTACTACTCATCAGGGAAACAGTGCAACCCAGCAGACAAACAATCATTCATCTCCAGCAAGAATGGAGGAGATCATTGAAGCCCGCAAGGTTGAGCAATCAGTTAAAGAATCACATGGTTTTCAAAAGCAAACATCCTTAACTGTTGAAAGAAGCACAAAATTGCCAACCCCACCGGTTGATGAACACTCTGAAGCTGTTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAACTACGTTGTGACCAAACCTCAACTTCAGAAGCACTTATTAGAGCCAAGGCAAAAGCTTATAATAATAATACTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCGCTTGGAGCCTCCAACGACCCAAACCTTGGTCTCAGGAAACATGAGGACACTGAAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGATGGTAACAGAGTCAGGAGAATCAGGAACCCTGTGGTTCATAACTTATCTGAAAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGCTACAGATAATGTCAATGGGAAATGGGTTATGGCCACTTATGATGCTACCAGCTGCAACCACGGCGCATCACATGAATCCTCAGCTAGGAATGGGATTCAGGCCACCACAACTACCTATTCCACCATCACTTTCTGCTATCACAGACAACAGACTTCAGATGTTTGGTTGTTTCCCAAACCAAATACCACCCATGCCAGCAATGCCTCATGCACCTTTCTTCCCTATCATTGCAAATTCTGCCACACAACCACACTTGGCTAACACCACCAACTTGGCAGAACATTTGGCTGCATCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGGTTTCCTTTCAACAACACAGCTGCACTAGTACTCCTACACTATCTACCCCTTTCATTTTTCCACAAAAATAG 1554 0.4299 MIQKMFDPSRSGMTRSSSHVASIYDNDFLELVWENGEVVVRGGSSNRSRKTNEERIHEDASINKRTRLNPLLYSLEDHFPPQRDSDMSTSHQSNGQDSCGQSSQSKLHEEFANLLKPVSIGNNHLQQCLPSSPLKKQRTVDSTQTPPTPKVNFSNFSIPAVFLKSTTHQGNSATQQTNNHSSPARMEEIIEARKVEQSVKESHGFQKQTSLTVERSTKLPTPPVDEHSEAVGHNCGVLGIHRSQGQLRCDQTSTSEALIRAKAKAYNNNTNMCHEPLLASSSVCSLGASNDPNLGLRKHEDTETYLSDNDGEPEDMVKQDRDGNRVRRIRNPVVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGNGLWPLMMLPAATTAHHMNPQLGMGFRPPQLPIPPSLSAITDNRLQMFGCFPNQIPPMPAMPHAPFFPIIANSATQPHLANTTNLAEHLAASLHGNATKLAPPSQVSFQQHSCTSTPTLSTPFIFPQK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1906 517 PANTHER TRANSCRIPTION FACTOR PIF3 1 513 IPR044273 GO:0003700|GO:0006355
Gso3g1906 517 CDD bHLH_AtPIF_like 330 392 - -
Gso3g1906 517 SMART finulus 336 385 IPR011598 GO:0046983
Gso3g1906 517 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 513 - -
Gso3g1906 517 MobiDBLite consensus disorder prediction 42 62 - -
Gso3g1906 517 MobiDBLite consensus disorder prediction 124 153 - -
Gso3g1906 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 407 IPR036638 GO:0046983
Gso3g1906 517 Pfam Helix-loop-helix DNA-binding domain 334 379 IPR011598 GO:0046983
Gso3g1906 517 Gene3D - 327 387 IPR036638 GO:0046983
Gso3g1906 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Gso3g1906 517 MobiDBLite consensus disorder prediction 85 106 - -
Gso3g1906 517 MobiDBLite consensus disorder prediction 47 62 - -
Gso3g1906 517 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1906 Gso-Chr3 44604209 44607156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1906 287 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 52.459 3.01e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1906 HLH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1906 K12126 - gmx:100804665 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1870 19 47397076 47399930 Gso3g1906 3 44604209 44607156 GST
Gso3g1906 3 44604209 44607156 Gso2g0062 2 738533 740613 PCT
Gso3g1906 3 44604209 44607156 Gso10g1280 10 38788099 38790599 PCT
Gso2g0062 2 738533 740613 Gso3g1906 3 44604209 44607156 PCT
Gso10g1280 10 38788099 38790599 Gso3g1906 3 44604209 44607156 PCT