Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1905 ATGGGCAAACCCGCTAGTTCTTCCTCTTCCTCTATTAGCAGCACTACCAACCGCCGCCTCCTCATTTCAACCGCATCTTCTCTCACTCAACAACTTCCTACTGATCTCAGGCTTGGACTCGGCATTTCTGCCACTCAACATGTTGCTTCTTCTATTTCAAGGGGCCAATGGCAACAACCACACCATCCTTTTGTGAACAATAATTATTCACAAGCTGCTGCTTCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGAAAGCTCAATATACTAGCTCATGGAGGCTACTATGAATTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAGATGAATGGGGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACGGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAG 543 0.4549 MGKPASSSSSSISSTTNRRLLISTASSLTQQLPTDLRLGLGISATQHVASSISRGQWQQPHHPFVNNNYSQAAASAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1905 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 179 IPR003311 GO:0005634|GO:0006355
Gso3g1905 180 Gene3D - 81 179 - -
Gso3g1905 180 SUPERFAMILY CAD & PB1 domains 83 172 - -
Gso3g1905 180 PANTHER AUXIN-INDUCED PROTEIN 2 179 - -
Gso3g1905 180 ProSiteProfiles PB1 domain profile. 87 177 IPR000270 GO:0005515
Gso3g1905 180 Pfam AUX/IAA family 74 174 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1905 Gso-Chr3 44592764 44594072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1905 1 172 B3 DNA Binding Superfamily AT5G62000 27.011 1.10e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso3g1905 AUX_IAA 5.7e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1905 K14484 - gmx:100818376 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1869 19 47383583 47384809 Gso3g1905 3 44592764 44594072 GST
Gso3g1905 3 44592764 44594072 Gso2g0064 2 756980 758306 PCT
Gso3g1905 3 44592764 44594072 Gso10g1277 10 38754481 38756104 PCT
Gso2g0064 2 756980 758306 Gso3g1905 3 44592764 44594072 PCT
Gso10g1277 10 38754481 38756104 Gso3g1905 3 44592764 44594072 PCT