Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1904 ATGCCAACGCTAACTATACCAATTTATTTCTTCTTCCTCTTCTCTCTCTGCATCTCCATCTCACCAAATACATACATGGACAACCGACACCACCACCGTGAATTCACCTTCTTAAGCTCCGCCCACTTCCTCGATCACATAGATCCTCCTTCTATCAAAGAAATGGATTTCTTCTCAACTTCATCGCCTCGTGATCATAAAAATAACACTAGTAGCCGTGATACCAATGATGATCACTATCAGAATCGTGATGATCAACATGACACTCATGATCGCCATGGATCACCAACACGCGTCATTGATCACCGTGTAAACACTGGACTCAATTTAACTTGTGCAAGCGCTGGAGTGACAAAAGCTGAAAATGGTGAAAATCCTGAAACTGAGTTGAGTTCTCTTGAAAGTGAATTGCTGAGACTACAAGAAGAGAATAACAAGTTAAGAAATGTGCTGGACCATATTACCAAAAGCTATACCCAACTACAGGCTCAGTTGTTCATCGCCTTGCAAAACCTTCCTCAGAATATGGAAACAAAAATTGTGGACCCAGGAACAAGCAGAAAGTTAGACGTGGTCAATGATGCATCGGTTTCGGATGAAAAGACTGATCAAGATGTATCGGTTTCTCGTTCAAACAACGCGGAGGCTTGTCCTGATGCTGCAGAAGATGTTCTTGACCGGTCCTCTTCACAGAGCTGGGGCTCATCCAAGTTAGAAGAACAACCCAAAACTACTGCAGAACAACTTGCTGCAGATCAGATTCCTCTCAGAAAAGCCAGGGTTTCCGTACGTGCTAGATCAGAAGCTCCCATGATTAGCGATGGATGTCAGTGGAGGAAATATGGACAAAAAATGGCCAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGCACTATGGCTGTAGGATGCCCAGTCCGCAAACAGGTTCAAAGAAGTGCAGATGACAAAACAGTGTTGATAACAAGCTACGAAGGCAATCACAACCACCCTCTGCCGCCAGCCGCCACCGCCATGGCAAATACTACATCAGCAGCTGCAGCCATGCTGCTATCAGGTTCAGCAGCAAGCAAGGAATCGCTAACAAACTCTGCAGGATATTACTCTTCTACAATTCCCTATGCTTCAATGGCAACCCTATCAGCTTCAGCTCCATTCCCAACCATCACTCTCGACTTGACCCAAAACCCCAACAACGCCGCCATGCAGCTGCACCGAGTACCACCAGGCCATGGCGGCGCCACGTTCCCTCTGCCACTGCATGCGGCAGCATCTGGTGGTCCCCACCTTCTAGGGCACCCCTTGTTCTTCCAACAGAAGCTGCTTCCACCGCAAGCATTAATGCCCCTTCTTCAACGACAACCTTCGTCGATGGTCGAAACGGTGAGTGCAGCCATTGCTTCTGATCCGAACTTCACTGCAGCTTTGGCAGCAGCAATCTCATCAATCATTGGAGTACCAAGAGGAGGCAATGACGGTAACAACAACAACAGTGGAAGTGGTGCTATTCCAGGTTCACCGCAGCTTCCTCAATCATGCACTACTTTCTCCACCAACTAG 1560 0.475 MPTLTIPIYFFFLFSLCISISPNTYMDNRHHHREFTFLSSAHFLDHIDPPSIKEMDFFSTSSPRDHKNNTSSRDTNDDHYQNRDDQHDTHDRHGSPTRVIDHRVNTGLNLTCASAGVTKAENGENPETELSSLESELLRLQEENNKLRNVLDHITKSYTQLQAQLFIALQNLPQNMETKIVDPGTSRKLDVVNDASVSDEKTDQDVSVSRSNNAEACPDAAEDVLDRSSSQSWGSSKLEEQPKTTAEQLAADQIPLRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRSADDKTVLITSYEGNHNHPLPPAATAMANTTSAAAAMLLSGSAASKESLTNSAGYYSSTIPYASMATLSASAPFPTITLDLTQNPNNAAMQLHRVPPGHGGATFPLPLHAAASGGPHLLGHPLFFQQKLLPPQALMPLLQRQPSSMVETVSAAIASDPNFTAALAAAISSIIGVPRGGNDGNNNNSGSGAIPGSPQLPQSCTTFSTN* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1904 519 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 47 519 - -
Gso3g1904 519 SUPERFAMILY WRKY DNA-binding domain 265 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1904 519 MobiDBLite consensus disorder prediction 54 101 - -
Gso3g1904 519 SMART WRKY_cls 272 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1904 519 ProSiteProfiles WRKY domain profile. 267 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1904 519 MobiDBLite consensus disorder prediction 225 245 - -
Gso3g1904 519 Gene3D WRKY domain 257 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1904 519 Coils Coil 130 164 - -
Gso3g1904 519 MobiDBLite consensus disorder prediction 67 99 - -
Gso3g1904 519 MobiDBLite consensus disorder prediction 195 245 - -
Gso3g1904 519 MobiDBLite consensus disorder prediction 491 519 - -
Gso3g1904 519 Pfam WRKY DNA -binding domain 274 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1904 519 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 47 519 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1904 Gso-Chr3 44571104 44575457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1904 33 519 WRKY Transcription Factor Family AT4G01720 43.922 2.13e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso3g1904 WRKY 6.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1904 - - gmx:100817839 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1867 19 47352136 47356956 Gso3g1904 3 44571104 44575457 GST
Gso3g1904 3 44571104 44575457 Gso2g0066 2 772153 776661 PCT
Gso3g1904 3 44571104 44575457 Gso10g1276 10 38732731 38737770 PCT
Gso2g0066 2 772153 776661 Gso3g1904 3 44571104 44575457 PCT
Gso10g1276 10 38732731 38737770 Gso3g1904 3 44571104 44575457 PCT