Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1898 ATGGAAGACGAGCCATTTCTTCTCACTACTACCACTTCCCAACCCATCACCGATTTTCTTCTTCCTTCTTCCAAGTCCTTCAACGACGTCACCACCACCACACGCGCGCGTGACGTCGCCGCCCAGGAGATTCAATCCGAACAACAACAACCTCCCAAGAAGAAAAAACTGAGTCGCTGCAAGACAGCACCTGCGATGGTGACCATGCGAGACCTCAAACCTAAGACACCCCAACTCCCCAAACCTCAAACCAGTTCCATTATACGACAAGGCATTTGGTTACTCGCCATGTACCTCTCCATAGGAGTCGCCATATACTCCTTCAACAGGGACCGTTTTTCCGGCATCGAAACACACCCCGTCGTCGACGCCCTTTACTTTTGCATAGTCACCATGTGCACCATAGGTTACGGAGACATAGCGCCGTTAACCCCATTCACCAAAATCTTTGCTTGCGCTTTTGTCTTGGTGGGGTTTGGGTTCATAGACATACTCCTCAGCGGGCTTGTTAACTTCGTTCTGGATTTGCAAGAGAACATGATCCTCACGGGGCTACAAATGGGTGCGAGTGATCAAAGGGAAGGTTTTTCTGCTAGGAATTACATCGTTGACGTGGCGAAGGGGAGGATGAGGATCAGGTTGAAGGTTGGTTTGGCGCTTGGGGTTGTGGTGCTGTGTATTGGGATTGGGGGTTTGGTTTTGTACTTTGTTGAAGGGTTGGATTGGGTTGATTCTATTTACTTGTCGGTTATGTCTGTCACAACGGTTGGGTATGGGGACCGAGCTTTTAAGACTCTTCCTGGTCGGTTATTTGCAGCTATTTGGTTGCTATTTTCTACTCTCATGGTGGCTCGGGCTTTTCTCTATTTGGCTGAGGCTAGAATCGATAGAAGGCATCGGAGAATGGCTAAGAAGGTTTTGCATAGGGAAATTACAGTTGAGGATTTGCTTGCTGCTGATATCAACAACACTGGTTTCATCAGGAAAGACAATACTAGTACTAGTTATTCTGAGTGGTGGAGATGTGGTCGTCCTCGTGGAACAAGACGAGGAACTGAACATGGCAATATATTAAGCAATCAAAGCAAATGCAGCATGCACAAGCCTTGA 1110 0.4775 MEDEPFLLTTTTSQPITDFLLPSSKSFNDVTTTTRARDVAAQEIQSEQQQPPKKKKLSRCKTAPAMVTMRDLKPKTPQLPKPQTSSIIRQGIWLLAMYLSIGVAIYSFNRDRFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPFTKIFACAFVLVGFGFIDILLSGLVNFVLDLQENMILTGLQMGASDQREGFSARNYIVDVAKGRMRIRLKVGLALGVVVLCIGIGGLVLYFVEGLDWVDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRMAKKVLHREITVEDLLAADINNTGFIRKDNTSTSYSEWWRCGRPRGTRRGTEHGNILSNQSKCSMHKP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1898 369 MobiDBLite consensus disorder prediction 350 369 - -
Gso3g1898 369 Pfam Ion channel 223 292 IPR013099 -
Gso3g1898 369 Pfam Ion channel 94 173 IPR013099 -
Gso3g1898 369 MobiDBLite consensus disorder prediction 353 369 - -
Gso3g1898 369 Gene3D - 68 189 - -
Gso3g1898 369 Gene3D - 198 319 - -
Gso3g1898 369 SUPERFAMILY Voltage-gated potassium channels 207 314 - -
Gso3g1898 369 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 38 330 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso3g1898 369 PANTHER TWO-PORE POTASSIUM CHANNEL 4-RELATED 38 330 - -
Gso3g1898 369 PRINTS Two pore domain K+ channel signature 130 158 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso3g1898 369 PRINTS Two pore domain K+ channel signature 254 263 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso3g1898 369 MobiDBLite consensus disorder prediction 40 59 - -
Gso3g1898 369 SUPERFAMILY Voltage-gated potassium channels 83 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1898 Gso-Chr3 44499280 44503605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1898 53 329 Ion Channels AT4G01840 70.567 8.34e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1898 K05389 - gmx:100801488 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1861 19 47297034 47299687 Gso3g1898 3 44499280 44503605 GST