Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1895 ATGTCAGGAAAGATCATTATCTCGGCTGTTTCTCTCATCCTGGTGGTGGGTGTGGCAATCGGCGTGGTGGTCGCCGTGAACAAGAAGGGCGAGGATCCTGCAGTTGAATCCCACCAAAAATACGTAGGGGTCATATGCCAAAACACCGATGAGAAAAAGCTCTGCCATGACACCCTGAGCTCCGTGAAGGGCATGGACAGCGCTGACCCCAAGGCCTACATCGCCACCGCTGTGAAAGCCACCATGGACAGCGTGACCAGGGCCTTCAACATGAGCGACAGGCTCACCACAGAGTACGGTGGCAGCGATAACGGAACCAAGATGGCCCTTGACGACTGCAAGGACCTCTTGCAATCAGCCATCGAGAGCCTCCAGCTCAGCACTGACATGGTTCACAACAACAACGTCCAGGCCGTGCATAACCAACAGGCTGATTTCAAGAACTGGCTCAGCGCTGTCATCTCTTACCAACAGGCCTGCACGGAGGGTTTTGACGATGCCAAAGACGGTGAGAAGAAGATCAAGGAGCAGTTGCAGACCCAGACCTTGGACAATGTTCAGAAACTCACTGGCATCACCCTTGACATTGTGAGTTCTTTGTCCCACATCCTCGAGCAGTTCGGCTTAAAGTTTAATCTTAAACCCGCATCTCGTCGTCTTCTCAGCGAGGATGGGTTCCCCACTTGGTTCTCTGCTGGTGATCGCAAGCTCTTGGCTCGTGGATGGAGAGCACGTATCAAGCCCAATGTTGTGGTTGCCAAGGATGGCTCTGGTCAGTTCAATACCGTTGCTCAGGCTATTGCTTCATACCCTAAGAATAACCAGGGTAGGTACATTATCTACGTTAAGGCCGGTGTCTATGACGAGTACATCACCGTTCCCAAGACTGCAGTCAACATTCTCATGTACGGTGATGGCCCTGCTAAGACCATCATCACCGGTCGCAAGAACTACGTCGAAGGTGTCAAGACCATGCAAACTGCCACTTTCGCCAACACTGCCGAAGGCTTCATTGCCAAGGCAATGACATTCCAGAACACAGCCGGTGCTGAGGGCCACCAAGCCGTTGCATTCAGGAACCAAGGAGACAGATCAGCTCTGGTTGGTTGCCACATTTTGGGGTACCAAGACACCTTGTACGTCCAGACCAACAGGCAATTCTACCGCAACTGCGTGATCTCTGGCACAGTGGACTTCATCTTTGGCACCTCCCCCACCGTGATCCAGCACTCAGTGATCATCGTGAGGAAGCCCTTGGACAACCAGTTCAACACGATCACCGCCGACGGAACATCCATGAAGAACATGGATACAGGAATCGTGATCCAGGGTTGCAACATCATCCCAGAAGCCGAACTCTTCCCTACAAGATTCCAGGTGAAGTCATACCTTGGAAGGCCATGGAAGCAATTCTCAAGGACAATTGTGATGGAATCCACCGTGGGTGACTTCCTTCACCCGGAAGGATGGTGCCCATGGGCCGGTGAACACTTCGAAGACACCCTGTACTATGCTGAATACAACAACGATGGACCTGGTGCCAACGTTAACGGAAGGATCAAGTGGAAGGGTTACCGCGGTCTCATTAGCCAGCAAGAAGCTGCTCAGTTCACCCCTGCCCAATTCCTCCAGGCTGGTTCCAACGGTGGAACTGACTGGTTGAAGGCTCTCCATGTTCCTCATGCACTTAACTTCTTGAAAGCTTGA 1707 0.5237 MSGKIIISAVSLILVVGVAIGVVVAVNKKGEDPAVESHQKYVGVICQNTDEKKLCHDTLSSVKGMDSADPKAYIATAVKATMDSVTRAFNMSDRLTTEYGGSDNGTKMALDDCKDLLQSAIESLQLSTDMVHNNNVQAVHNQQADFKNWLSAVISYQQACTEGFDDAKDGEKKIKEQLQTQTLDNVQKLTGITLDIVSSLSHILEQFGLKFNLKPASRRLLSEDGFPTWFSAGDRKLLARGWRARIKPNVVVAKDGSGQFNTVAQAIASYPKNNQGRYIIYVKAGVYDEYITVPKTAVNILMYGDGPAKTIITGRKNYVEGVKTMQTATFANTAEGFIAKAMTFQNTAGAEGHQAVAFRNQGDRSALVGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSPTVIQHSVIIVRKPLDNQFNTITADGTSMKNMDTGIVIQGCNIIPEAELFPTRFQVKSYLGRPWKQFSRTIVMESTVGDFLHPEGWCPWAGEHFEDTLYYAEYNNDGPGANVNGRIKWKGYRGLISQQEAAQFTPAQFLQAGSNGGTDWLKALHVPHALNFLKA* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1895 568 ProSitePatterns Pectinesterase signature 1. 274 293 IPR018040 -
Gso3g1895 568 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Gso3g1895 568 Pfam Pectinesterase 249 545 IPR000070 GO:0030599|GO:0042545
Gso3g1895 568 CDD PMEI-like_3 45 201 - -
Gso3g1895 568 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
Gso3g1895 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Gso3g1895 568 SUPERFAMILY Pectin lyase-like 246 556 IPR011050 -
Gso3g1895 568 PANTHER PECTINESTERASE 3 564 - -
Gso3g1895 568 PANTHER PECTINESTERASE 3 564 - -
Gso3g1895 568 Gene3D - 243 564 IPR012334 -
Gso3g1895 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 202 IPR035513 -
Gso3g1895 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 199 IPR006501 GO:0004857
Gso3g1895 568 SMART PMEI_2 37 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1895 Gso-Chr3 44481882 44483936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1895 1 560 Carbohydrate Esterase AT2G47030 40.932 2.57e-139 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1895 K01051 - gmx:100815015 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1895 3 44481882 44483936 Gso2g0073 2 836645 838987 PCT
Gso3g1895 3 44481882 44483936 Gso10g1267 10 38520507 38523576 PCT
Gso10g1268 10 38527050 38529298 Gso3g1895 3 44481882 44483936 PCT