Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1893 ATGGGTGGCCATGCAGCCACAACTTACTCGGCGGCCAAGATTTCGGTGTGGTGGGACATTGACAACTGTCGTGTTCCCAAAGGCCACAACGCCAATTCCATCGCTCAGAACATAACCTCCGCCCTCGTCGGCATCAACTACGCCGGCCCCCTCTCCATCTCCGCCTATGGTGACACCAACCGCATCCCTCCCCCCGTCCAACACGCCCTCTCCAGCACCGGCGTTTCCCTCAACCACATCCCCACCGGTGCGAATGATGCTAGCGACATGAAGATTCTTGTGGACATGCTGCTATGGGCCGTAGACAATCCCGCCCCCGCTAACTACTTGCTCATATCCGGCGACACCAACTTCTCCAACGCCCTTCACCAACTCAGTTTGCGAAAGTACAACATTCTCCTCGCCCACCCGCCGCACGTTTCTCCCTCCCTCGCCGCCGCCGCCAAAGTCGTCTGGCTCTGGACAACCCTCTCCGCCGGCGGCCCGCCCCTCTCCGACTCCACCTCCAACTCCTGTAAACCCCCCACTCCCGCCCCTCTCCTTCAACCTTTTCAATTCAAACCCAAACCTAAATACATTAGAAAAATTACCACAATAACCCCAATCGAGACCAAGAACAATGATGCAGAACCACTACCGCCACCACCACAACCGCTAAGAAAGTTCTTTATCGGAGCACCTCATGAATTCTTTACTAGTAAATGTAACGAACCCGTAAACCTAATCCCAACCCCGACTAGTTCTAAGGAGATTAATCAAATTTTAATTCCTCGTCGTGATTCACACCAAAAAAAGCTAAATGAAATTCCTCGTGTTATGAATGCTACTACTCATCAAGATAATTCTGAGTACAATGTGGAGAATCTAATTGATGTTATTATGAGAACCCTAAACTTGCTCAAGGTTGAAATGATTCTGCCCTCTGAAGCAAATATAACTGATTGCATTCGTTATGGGGACCCCAAGTATCAGACAATTGATGTCAGGATGGTCTTGGATGCTGCCATACAGCAAGGTAGGCTAGCCAAACGAGTCTGTGGGCCCATGCATTTGTATCTTGCTAGAAATGACACGCTCTGGAACTGTGTCAACCATATGGGTGGTCATCCTTGTGATTTTCCGCAAGAAACATGGGATAGAGTCAAGCAGTTCCTCACTTCATCATCTGGGAGATCGTTGATGTTGACATCTCGTTGCAGATTTGAAGCATCTGTGACTCTAAAGAAATCATGTCTTCGAGAGGTTGTATTAGGGGATGTGCTTAAAATTCTAGAGATGATGATCACAGTCAAGAAATGGATTATACATCATCATAGTGGGTGGCAGCCAATTACCATTAGGCTTAAGGAGAGTATATTAAGTAGCTCAGTTGACATAGCTAAATCATGA 1389 0.4824 MGGHAATTYSAAKISVWWDIDNCRVPKGHNANSIAQNITSALVGINYAGPLSISAYGDTNRIPPPVQHALSSTGVSLNHIPTGANDASDMKILVDMLLWAVDNPAPANYLLISGDTNFSNALHQLSLRKYNILLAHPPHVSPSLAAAAKVVWLWTTLSAGGPPLSDSTSNSCKPPTPAPLLQPFQFKPKPKYIRKITTITPIETKNNDAEPLPPPPQPLRKFFIGAPHEFFTSKCNEPVNLIPTPTSSKEINQILIPRRDSHQKKLNEIPRVMNATTHQDNSEYNVENLIDVIMRTLNLLKVEMILPSEANITDCIRYGDPKYQTIDVRMVLDAAIQQGRLAKRVCGPMHLYLARNDTLWNCVNHMGGHPCDFPQETWDRVKQFLTSSSGRSLMLTSRCRFEASVTLKKSCLREVVLGDVLKILEMMITVKKWIIHHHSGWQPITIRLKESILSSSVDIAKS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1893 462 CDD PIN_limkain_b1_N_like 13 137 - -
Gso3g1893 462 PANTHER LIMKAIN B LKAP 236 440 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso3g1893 462 PANTHER LIMKAIN B LKAP 5 171 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso3g1893 462 Pfam OST-HTH Associated domain 397 451 IPR025677 -
Gso3g1893 462 Gene3D - 9 156 - -
Gso3g1893 462 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 236 440 - -
Gso3g1893 462 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 5 171 - -
Gso3g1893 462 Pfam NYN domain 13 149 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1893 Gso-Chr3 44470181 44472322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1893 5 170 C2H2 Transcription Factor Family AT5G61190 66.867 1.43e-69 237