Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1889 ATGGATGACTGTTGTGCCGTTTGCGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGTTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCGTTGCTGCATCTGCAAGACCGAATGCAACCTCGTTTTCGTCACCAAGGCTCTAGGTGATTATACGAGGATGATCAATGATTTTTCGACCCTTCCTTTGGAGGCGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAGGATGATCAAGGCTATGTGCAGGCTTTCGTGCAATGTATGTGACAAGATTGAGGATCAACCACATGATGCTGCTTCAAGGCGGCGAGCAAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCATAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACGTAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGCAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATTCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTGGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCTAAGCGTAATGCTGCTCTTCAGATACCAACAAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGTGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCAAACATTTCTTGATCAATCGACATCAAGTAGTGGGCAAGTTGCCGTTGATGATGGGAATGATGATATTGATGCTCTCATTCAGCCATTTGAATCATTAGCTGCAGGTTCTGAAGCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGGAATGGACCTCTGGAAGATTCTTCCTTTCCACCACTACCCATAATTTCCAGCAATGGCCAACAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCTGTTATCAATTCTGGTAATGCTTGGCCAGCAGCAGGTCGTGGACTGGTACAGTCATCAAGTAATCCTTCACAATCTAAACTTTCAACAAATAATGTCCTTGGACTGTCTCGTAACACTGGGCAGATGAAAACAGTAATTAACAGTGGACCGTCATCATCAACTTATGCTGGTTCTATTCAGGCTACACAGAGAACTGCTCATGGACAATTTCCTGCTGGTTCATCGAGGAACACACGTGACAATGTAAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAATTCTGTTGAAGTTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTAAGTAAGTTACCTGCCAGCAGCCAGTCTTCATTGAATGTGGAAAATGTTCAATCCGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGGCCAATATCGCCAAGGCACAATAGATACAGGTACATATCTGGACTATGTACAGCAGTTTGGCTTGTCTCATCTTGTTCTTGAGTTGGCAAGACTATGCCCGGATACTCACAAACAGAAAGAGCTTGTTGAGGCTTACAACGCAAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTGGTTCGAGGCAGCCCTAGCACCCATTCCAAAGACAGTAACGTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCAGAGAGAAATTAGCAAATAACTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGCGGAGGTGCTATCAAGGGGTGATTACCGCAGTGACGGAGGCAAATTAAAAATCGAGCAGTGGATTGATATGAATTCTGGTAGTCAACCTACGATGAAGCTTGGTGGGAAGACTGAAACATCAAACGACAGTTTATCTAATCAAAGTAAAGACGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCTAAGTTCCTGAGAGTACGCCTTGGTGATGGTTCTGTTTCAGCCCTTCTTGATCAATCAGATCCTGGAACAACAGACGGCTCAGAAGGTAACAAGGATGACTCTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTAATAAACTATTTTCCTAG 2499 0.4378 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVFVTKALGDYTRMINDFSTLPLEAREGKVGSYWYHEDTNAFFDDVDHYRMIKAMCRLSCNVCDKIEDQPHDAASRRRAKFRNIGQLKGHLFHRHKLHMCNLCLEGRKVFICEQKLYTKAQLNQHVISGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDTENQLSMAIEASLETANAEQTFLDQSTSSSGQVAVDDGNDDIDALIQPFESLAAGSEASARYLQALGHSSRNGPLEDSSFPPLPIISSNGQQRSKHELEGSSSNTMAARLRRHGNRTVSVINSGNAWPAAGRGLVQSSSNPSQSKLSTNNVLGLSRNTGQMKTVINSGPSSSTYAGSIQATQRTAHGQFPAGSSRNTRDNVRIVHSASAPNLMENNSVEVSISDFPPVSAAQVSKLPASSQSSLNVENVQSANKSLVEKIRGALDFDEERYSIFKDISGQYRQGTIDTGTYLDYVQQFGLSHLVLELARLCPDTHKQKELVEAYNASLQRDAFPEINLVRGSPSTHSKDSNVNKKGKGKSVDSRGSNSREKLANNFLSTVHQLQANYKSSEEKAEVLSRGDYRSDGGKLKIEQWIDMNSGSQPTMKLGGKTETSNDSLSNQSKDDGGGGNKQRKKTSKFLRVRLGDGSVSALLDQSDPGTTDGSEGNKDDSGGGPPVRGVWRKGGGNKLFS* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1889 832 MobiDBLite consensus disorder prediction 736 767 - -
Gso3g1889 832 MobiDBLite consensus disorder prediction 392 424 - -
Gso3g1889 832 MobiDBLite consensus disorder prediction 659 690 - -
Gso3g1889 832 PANTHER EBR1 1 831 - -
Gso3g1889 832 MobiDBLite consensus disorder prediction 671 687 - -
Gso3g1889 832 CDD RING-HC_ZNF598 5 46 IPR041888 -
Gso3g1889 832 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Gso3g1889 832 MobiDBLite consensus disorder prediction 734 832 - -
Gso3g1889 832 MobiDBLite consensus disorder prediction 491 517 - -
Gso3g1889 832 MobiDBLite consensus disorder prediction 794 808 - -
Gso3g1889 832 PANTHER ZINC FINGER PROTEIN 598 1 831 IPR044288 GO:0061630|GO:0072344
Gso3g1889 832 SMART c2h2final6 252 281 IPR013087 -
Gso3g1889 832 SMART c2h2final6 197 220 IPR013087 -
Gso3g1889 832 SMART c2h2final6 108 145 IPR013087 -
Gso3g1889 832 SMART c2h2final6 221 251 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1889 Gso-Chr3 44442197 44446639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1889 1 832 C2H2 Transcription Factor Family AT3G62240 53.023 0.0 834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1853 19 47223995 47228608 Gso3g1889 3 44442197 44446639 GST