Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1879 ATGGATGTTAAGGTGAAGAAATCACAGTCCATAGAATTACAGGTGCAGGATTGTGAAGAAGACATCAGAAAAGGTCCATGGAGCGTTGAAGAGGACACCATTCTCCAAAATTACGTCGCCACCCACGGTGACGGTCGCTGGAATTCCCTCGCACGCTCTGCAGGCCTGAAGAGATCAGGGAAAAGTTGCAGGTTAAGATGGCTAAACTACTTGCGTCCCGATGTTCGTCGTGGAAATATAACACTCCAAGAACAGATAACGATTCTGGAACTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCAGGTAGAACAGACAACGAAATAAAGAATTATTGGAGGACCCGAGTGATTAAGCAAGCAAGGAACCTCAAGTGTGACGTGGACAGTAAACAGTTCCAAGATGCCTTGCGTTACGTCTGGATGCCCCGTTTGATAGAGCGGACTCACCCTTCACTACCAATACCATCGGAAACTCACGGCCCGGCCCATGTTGACCCAAATCCAACCGCTCCGGCCCAACACGAGTTGCATGGTTCTGGTTCGGGCTCGGGTCCCTCTGCCTTGGAGGATGTCTCATCAGGAGCGGAGTTAAACGCTCCTTTAGATTCTGATTCTGAACATTTGGTTTATGATGTTTGGGGTACATGCGACAGTTTCAATGGGAATAGCACGTTACCTTTAGGTGGTGGGGACTTGATGGAGAGTTTGTGGGAGGATGAGAATATGTGGCTTATGCGACAGCTTTGTCATGATCTGGAAATTAAAGACAATTTCCTTGCGTGA 801 0.4844 MDVKVKKSQSIELQVQDCEEDIRKGPWSVEEDTILQNYVATHGDGRWNSLARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILELHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVIKQARNLKCDVDSKQFQDALRYVWMPRLIERTHPSLPIPSETHGPAHVDPNPTAPAQHELHGSGSGSGPSALEDVSSGAELNAPLDSDSEHLVYDVWGTCDSFNGNSTLPLGGGDLMESLWEDENMWLMRQLCHDLEIKDNFLA* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1879 266 Gene3D - 81 122 - -
Gso3g1879 266 SMART sant 23 73 IPR001005 -
Gso3g1879 266 SMART sant 76 124 IPR001005 -
Gso3g1879 266 Gene3D - 24 76 - -
Gso3g1879 266 MobiDBLite consensus disorder prediction 156 204 - -
Gso3g1879 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Gso3g1879 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 170 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso3g1879 266 MobiDBLite consensus disorder prediction 180 194 - -
Gso3g1879 266 CDD SANT 81 120 IPR001005 -
Gso3g1879 266 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Gso3g1879 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 7 170 - -
Gso3g1879 266 CDD SANT 26 71 IPR001005 -
Gso3g1879 266 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Gso3g1879 266 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Gso3g1879 266 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Gso3g1879 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Gso3g1879 266 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1879 Gso-Chr3 44345928 44347285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1879 19 257 MYB Transcription Factor Family AT2G47190 48.302 2.15e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g1879 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1879 K09422 - gmx:100797220 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1843 19 47134634 47136375 Gso3g1879 3 44345928 44347285 GST
Gso3g1879 3 44345928 44347285 Gso10g0093 10 988167 989355 PCT
Gso10g0093 10 988167 989355 Gso3g1879 3 44345928 44347285 PCT