Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1878 ATGGAGAGAAGTAGTGAAGAGGAGATGTTAATAACGAAAGGTCCATGGACAGAGCAAGAGGATTCTCTTCTCTTCAATTACATCACTGTCCACGGCGAAGGTCACTGGAACTCTGTCGCTCGCTACACAGGTCTAAAACGAACGGGCAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCGGGAAGAACAGACAACGAGATAAAGAATTATTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTAAAATGTGATGTGAACAGCAAGCAATTCAGGGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTAGAGCGGATTCGGGCTCAGGCCTCATCATCGGCCCAAGCCCACCAAAGCAGCTTAATCTCCAACAGTAACACTCAAGCACACAGTGGATTGTTGTCATCAGCGCTTCATGCCCACGCGCCTTCTCTCTCTGACTCGAGCGCGTCGTACAATCTTATGGGTGCTGATGCTGGAAGTTGCTCATCTCATAGCTACTACTCAGACATAGCAGGCAATGGTTTTGGTGGTGCGGACTTGTGGACGGATCAAAACATTTGCTTTCTGCAACACCAGCTTGCTCATCATGACTTGTTCTGA 714 0.479 MERSSEEEMLITKGPWTEQEDSLLFNYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIRAQASSSAQAHQSSLISNSNTQAHSGLLSSALHAHAPSLSDSSASYNLMGADAGSCSSHSYYSDIAGNGFGGADLWTDQNICFLQHQLAHHDLF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1878 237 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Gso3g1878 237 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gso3g1878 237 ProSiteProfiles Myb-like domain profile. 13 60 IPR001005 -
Gso3g1878 237 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Gso3g1878 237 CDD SANT 70 109 IPR001005 -
Gso3g1878 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gso3g1878 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 3 174 - -
Gso3g1878 237 CDD SANT 15 60 IPR001005 -
Gso3g1878 237 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gso3g1878 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 174 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso3g1878 237 Gene3D - 70 111 - -
Gso3g1878 237 SMART sant 12 62 IPR001005 -
Gso3g1878 237 SMART sant 65 113 IPR001005 -
Gso3g1878 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 60 IPR017930 -
Gso3g1878 237 Gene3D - 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1878 Gso-Chr3 44338241 44339634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1878 6 232 MYB Transcription Factor Family AT2G47190 49.600 2.16e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g1878 Myb_DNA-binding 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1878 K09422 - gmx:547458 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1842 19 47125827 47127748 Gso3g1878 3 44338241 44339634 GST
Gso3g1878 3 44338241 44339634 Gso2g0087 2 948047 949578 PCT
Gso3g1878 3 44338241 44339634 Gso10g0094 10 996067 997725 PCT
Gso2g0087 2 948047 949578 Gso3g1878 3 44338241 44339634 PCT
Gso10g0094 10 996067 997725 Gso3g1878 3 44338241 44339634 PCT