Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1876 ATGGACGCGAAGGATATCCTGGGATTGCCCAAAAACTCGTTCCCATCTCTCGAGAAGAAATCTCGTCCTCCCAAAGAGTCTCAAAGAAAACCAGATGGCATTTCGCGCGAGGTGTATGCGCTTACGGGCGGATTGGCCTCTCTCATGCCTGCAATTGAAGCCTCTCAGTTGAAGAAAAAGCCTCTTCCTCTCGAAAAAATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTACCATTGGGTACGAGTCATCAATGGTGTTCCTCCTACGGGGGACTATTCTTTTGCCAAGTATAATAAGTCCGTTGATGTTATCAAATACACAGATGAGGAGTATGACAAGTATTTGTCAGATCCTACGTGGACCAAAGAGGAGACAGATCAACTATTTGACTTGTGTGAGAGATTTGATCTCCGATTTATTGTAATAGCTGATAGGTTTCCATCATCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCCCGGGCTATATTGATTGCTAGGGCTCCATCTTCTGGAGATGTTGTGGCACATTCTATTGTTAAGGAACCGTATAATGTTGCACAAGAAATGGAGCGAAAAAGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAAAATAGCTGAAAAACGCCTACCTCCCAAGGTTGCTGGACAGTCTCAGTTTGTTGCTTCTAATGCTGGTGCAGAAGCTATAGAGAGGGCTGTCCCTGGTGAAACCGTATCTCCATCAAATGTGCAACTTCCAATGGTTGCTCCAGATAATGCATCTACTCTGGCTTCTCTTCGCATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGGGAACGCATCAGCTGGACTTCGGACTATCAAACGGATTGAGCAAACTTTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCAACGAAAGCTGTTTGTGCAGAGCATCTTGAATTAAGAAAAGAAATACTAACATGGCTTAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCCTCCTTTCGTGATGGGTCATATGGTGAAACACCTGGCACACCAAAGGATCGAACATTTATTCCAGATTCAATGAATTTCGGAGTGGAAAGGGTAGGCAAAAAGGACCAAAAGCGCAAGGCACCTGGAGCTCCATCAGCTCATAAAAGACCTAGAAAACTAAAGGCCTCAGATCTTTAG 1278 0.4374 MDAKDILGLPKNSFPSLEKKSRPPKESQRKPDGISREVYALTGGLASLMPAIEASQLKKKPLPLEKITWQWLPFTSSARKDNLHLYHWVRVINGVPPTGDYSFAKYNKSVDVIKYTDEEYDKYLSDPTWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARAPSSGDVVAHSIVKEPYNVAQEMERKRALSMVLSQTRQQERRDEEVLVEAKKIAEKRLPPKVAGQSQFVASNAGAEAIERAVPGETVSPSNVQLPMVAPDNASTLASLRMLRVYLRTYALEQMVQAGNASAGLRTIKRIEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKDRTFIPDSMNFGVERVGKKDQKRKAPGAPSAHKRPRKLKASDL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1876 425 MobiDBLite consensus disorder prediction 18 33 - -
Gso3g1876 425 SUPERFAMILY Homeodomain-like 126 172 IPR009057 -
Gso3g1876 425 MobiDBLite consensus disorder prediction 366 425 - -
Gso3g1876 425 MobiDBLite consensus disorder prediction 395 409 - -
Gso3g1876 425 CDD SANT_DMAP1_like 129 171 - -
Gso3g1876 425 Gene3D - 98 184 - -
Gso3g1876 425 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 425 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Gso3g1876 425 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 308 370 IPR008468 GO:0005634|GO:0045892
Gso3g1876 425 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Gso3g1876 425 SMART sant 125 174 IPR001005 -
Gso3g1876 425 PANTHER BNAA04G26950D PROTEIN 2 425 - -
Gso3g1876 425 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1876 Gso-Chr3 44318843 44325499 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso3g1876 DMAP1 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1876 K11324 - gmx:100808220 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1840 19 47108667 47116037 Gso3g1876 3 44318843 44325499 GST